SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
It should be pretty easy to add a realignment feature based on a known traceback path (can be approximate). The block will just shift to follow that path.
It should be pretty easy to add a realignment feature based on a known traceback path (can be approximate). The block will just shift to follow that path.