SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
When the max score lies in the bottom right border cells in a block, half the block size. This allows the block size to shrink after it grows to span a large gap.
When the max score lies in the bottom right border cells in a block, half the block size. This allows the block size to shrink after it grows to span a large gap.