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Materials related to events I might attend, and to talks I am giving
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14 June 2019, Charlottesville: Scientific visualization workshop #574

Closed Daniel-Mietchen closed 5 years ago

Daniel-Mietchen commented 5 years ago

as per https://education.cadre.virginia.edu/#/workshop/1557

Daniel-Mietchen commented 5 years ago

Slides sit on Rivanna and partly in Box.

Daniel-Mietchen commented 5 years ago

First tool to look at is ITK-SNAP, which can be downloaded from http://www.itksnap.org/pmwiki/pmwiki.php?n=Downloads.SNAP3 , which led me to https://sourceforge.net/projects/itk-snap/files/itk-snap/3.8.0/itksnap-3.8.0-20190612-Linux-x86_64.tar.gz/download .

Daniel-Mietchen commented 5 years ago

Demo data is brain images.

Daniel-Mietchen commented 5 years ago

First dataset being visualized was brain MRI, and specifically the hippocampus.

Next, we went into thoracic MRI and segmented out the spleen.

In both cases, we were using ITK-SNAP.

Daniel-Mietchen commented 5 years ago

Now on to remote sensing data.

Daniel-Mietchen commented 5 years ago

Python Imaging Library can read dozens of different file formats. It is included in the PIL module.

Daniel-Mietchen commented 5 years ago

Good number of Python examples for image processing using this PIL module. See remote_image.ipynb in the workshop's directory.

Daniel-Mietchen commented 5 years ago

Next thing we are looking at is Paraview, which is open source and based on the Visualization Toolkit.

It's great for many things but not too well suited for CSV files.