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DanielAndreasen / SWEETer-Cat

Make SWEET-Cat sweet again
http://sweetercat.herokuapp.com/
MIT License
12 stars 1 forks source link

Scheduled monthly dependency update for September #170

Closed pyup-bot closed 4 years ago

pyup-bot commented 4 years ago

Update bokeh from 2.1.1 to 2.2.1.

Changelog ### 2.2 ``` -------------------- * bugfixes: - 5589 Some WebGL not working on Safari - 6775 [component: bokehjs] SVG backend not correctly coloring glyphs in legends - 7707 [component: bokehjs] Linking the ranges of plots will break the LODEnd event - 8046 [component: bokehjs] Extra whitespace with SVG export - 8446 [component: bokehjs] SVG not displaying scatter output - 8744 [component: bokehjs] Plots containing arrows fail to render correctly with svg output backend. - 9001 [component: bokehjs] hatch_pattern and svg - 9213 [component: bokehjs] Svg backend cannot draw annular_wedge correctly [BUG] - 9436 [component: bokehjs] [BUG] Arrow glyph does not update - 9551 [component: bokehjs] [BUG] export_svg shifting x-axis upward and overlapping with ticks in Bokeh v1.4 - 9927 [component: bokehjs] [BUG] MultiChoice displayed value is not updating - 10002 [component: bokehjs] Bokeh not rendering, stuck on Loading BokehJS [BUG] - 10108 webdriver failing to find installed firefox/geckodriver - 10146 [BUG] `js_on_event` doesn't work when used in a callback - 10147 [component: bokehjs] [BUG] `TileRenderer` ignores the `visible` property - 10153 [component: bokehjs] [BUG] Typed Arrays returned as dicts - 10164 custom latex examples do not run - 10174 [BUG] Incorrect type of `Select.options` - 10191 [component: bokehjs] [BUG] Tools in toolbar flickering and occasionally ignores clicks when HoverTool and hover glyph used - 10193 [component: bokehjs] [BUG] `GeoJSONDataSource` incorrectly processes `MultiPolygon` geometry type - 10195 [component: bokehjs] [BUG] visual glitch on empty plots with a second y-axis - 10215 [component: bokehjs] [BUG] Band is not updated when the model is changed - 10219 [component: bokehjs] [BUG] Misplaced Rects when using incomplete categorical ranges - 10233 [component: bokehjs] [BUG] bokeh js v2.x legacy libraries - 10246 [component: bokehjs] [BUG] wegbl and gridplot with a visible=False element - 10249 [component: bokehjs] [BUG] SaveTool generates smaller image than plot - 10251 [component: bokehjs] [BUG] DataTable column sort not working with NaNs - 10273 [BUG] export_svgs() function creats two files (one is empty) - 10281 [component: bokehjs] [BUG] line selection is broken - 10301 [component: bokehjs] bokehjs' version has duplicated dev suffix - 10302 [component: bokehjs] [BUG] Slider values increment by 2x steps - 10305 [component: bokehjs] SVG backend doesn't respect NaN/non-finite values - 10319 [component: bokehjs] [BUG] $name not being passed to hovertool for image plots - 10320 [component: bokehjs] Plotting with transforms behavior change - 10324 [component: bokehjs] Image Hover is broken - 10334 [component: bokehjs] Chrome 84 breaks toolbar rendering - 10336 [BUG] bokeh.embed.components outputs escaped javascript - 10358 [component: bokehjs] [BUG] slickgrid import has syntax error - 10361 [component: bokehjs] Autoload with widgets fails if earlier autoload does not specify widgets - 10362 [component: bokehjs] [BUG] If axis label is added/removed, the layout is not changed right away - 10365 [component: bokehjs] Tooltip chooses wrong side in grid plots - 10367 [component: bokehjs] [BUG] NumericInput and Spinner several bugs - 10370 [component: bokehjs] ImageURL doesn't respect anchor property when computing bounds - 10394 [component: bokehjs] [BUG] Can't add tabs after closing a tab - 10409 [component: examples] Spectrogram is broken - 10412 [component: bokehjs] [BUG] server_session is completely broken - 10238 [component: docs] Fix windows docs build issues - 10244 [component: bokehjs] Handle type="module" w/o entry point packages - 10271 fix over-quoting by components - 10378 [component: bokehjs] Distinguish raw strings from HTML in replace_placeholders() * features: - 3653 [component: server] Use a different error for "can't open socket" vs "404" - 6864 [component: bokehjs] DataTable autoEdit expose - 8595 [component: bokehjs] [Feature request] Allow DataTable to take its natural height - 8924 [component: bokehjs] Allow to derive ColorBar's low/high from data - 9169 [FEATURE] SVG export for gridplot - 9654 [FEATURE] Iterate over submodels of a model and draw submodel graph - 9956 [component: bokehjs] [FEATURE] varea_stack support in bokehjs - 10179 [component: bokehjs] [FEATURE] Allow any number in spinner using step=None - 10265 [FEATURE] Add a DocumentReady event - 10374 [FEATURE] Allow defining custom format for NaNs in DataTable NumberFormatter - 10066 [component: bokehjs] Add support for copying canvas to clipboard - 10353 Enhancements for DataTable * tasks: - 10083 [component: bokehjs] bokehjs needs a better assertion framework - 10086 [component: tests] Restore BokehJS linting - 10089 [component: bokehjs] Simplify/refactor filters in bokehjs - 10207 Need to run CI on release branches - 10209 [component: bokehjs] Naming for new coordinate systems - 10213 [component: build] Issues / Changelog script will need update - 10234 [component: bokehjs] Improve responsiveness when hovering over many points - 10252 Deprecate Oval? - 10282 [component: docs] Update blog links on all websites to point to Medium - 10283 [component: docs] Contributing guide needs updating wrt. BEP 6 - 10284 [component: tests] [BUG] Housekeeping: remove documentation references to py.test - 10289 Housekeeping: Update python idioms - 10306 [BUG] cElementTree has been deprecated and will be removed in favor of ElementTree - 10310 [component: docs] [BUG] Link in docs is not working for fill color property - 10329 [component: bokehjs] Change NumberArray to Float32Array? - 10344 [component: docs] Documentation and examples updates for 2.2 release - 10347 [component: docs] Adding links to BEP 6 and BEP landing page to developer docs - 10397 [component: docs] Color site for OpenURL no longer exists - 10161 [component: bokehjs] Redefine min()/max() and introduce minmax() function - 10162 [component: bokehjs] Reduce memory footprint of data indexing - 10163 [component: bokehjs] Don't sort indices by distance in _hit_point() - 10176 [component: bokehjs] Ensure typed arrays are used for storing numerical data - 10185 [component: bokehjs] Fill in the gaps in bokehjs' property definitions - 10187 [component: docs] Fix typo in docs. - 10200 [component: bokehjs] PlotLayout -> core.layout.BorderLayout - 10201 [component: bokehjs] Drop layout's computed variables in favour of bbox - 10202 [component: bokehjs] A basis for sub-coordinate systems - 10208 [component: bokehjs] Rewrite gloo in TypeScript and add it to bokehjs - 10222 [component: build] Fixes for sphinx 3.1.1 - 10225 [component: bokehjs] Improve performance by replacing _build_discontinuous_regions() - 10226 [component: bokehjs] Optimize `HasProps.setv(attrs, {silent: true})` - 10227 Forward merge from 2.1.1 - 10229 [component: bokehjs] Redesign the implementation of CDSView's filters - 10235 [component: bokehjs] Redesign "materialization" of data specs - 10239 [component: build] Release Automation (pt 1) - 10240 [component: bokehjs] Corrected EqHistColorMapper with inverted colormap edge transform - 10241 [component: bokehjs] Allow to resize images in visual tests - 10257 [component: docs] Misc warnings cleanup - 10260 [component: docs] 8448 Fix typo "do no yet work" -> "do not yet work" in bokeh/sphinx/source/docs/user_guide/interaction/legends.rst - 10262 [component: bokehjs] Bump electron from 1.8.8 to 9.1.0 in /bokehjs/examples/electron - 10269 [component: docs] Fix typos in User Guide - 10272 [component: bokehjs] Improve performance of selections - 10275 [component: docs] Fix minor typos - 10277 [component: docs] Docs change anaconda install source - 10298 Add bokeh logo palette; remove rogue double-quote from template - 10304 [component: docs] Add note about nginx large_client_header_buffers to docs - 10315 [component: bokehjs] Bump lodash from 4.17.15 to 4.17.19 in /bokehjs - 10316 [component: server] Require auth on WSHandler - 10330 [component: bokehjs] Initial webgl cleanup - 10337 [component: docs] Fix typos in Dev Guide - 10338 [component: bokehjs] Replace for-in loop with for-of and keys()/values()/entries() - 10342 [component: bokehjs] Update bokehjs/package.json - 10346 [component: tests] Perform eslint checks on codebase tests - 10348 [component: bokehjs] Upgrade to SlickGrid 2.4.27 - 10350 [component: bokehjs] Fix bokehjs' legacy bundles - 10352 Rev pillow version for sec advisory - 10354 [component: bokehjs] Code dupe experiements - 10357 [component: docs] Update out of date HoverTool docstring - 10363 [component: bokehjs] Modernized DataTable styling - 10393 [component: tests] Mark webdriver's tests as flaky - 10402 [component: bokehjs] Redesign SVG backend ```
Links - PyPI: https://pypi.org/project/bokeh - Changelog: https://pyup.io/changelogs/bokeh/ - Repo: http://github.com/bokeh/bokeh

Update numpy from 1.19.0 to 1.19.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/numpy - Homepage: https://www.numpy.org

Update pandas from 1.0.5 to 1.1.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/pandas - Homepage: https://pandas.pydata.org

Update scipy from 1.5.0 to 1.5.2.

Changelog ### 1.5.1 ``` compared to `1.5.0`. In particular, an issue where DLL loading can fail for SciPy wheels on Windows with Python `3.6` has been fixed. Authors ======= * Peter Bell * Loïc Estève * Philipp Thölke + * Tyler Reddy * Paul van Mulbregt * Pauli Virtanen * Warren Weckesser A total of 7 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete. ```
Links - PyPI: https://pypi.org/project/scipy - Changelog: https://pyup.io/changelogs/scipy/ - Repo: https://github.com/scipy/scipy/releases - Homepage: https://www.scipy.org

Update matplotlib from 3.2.2 to 3.3.1.

Changelog ### 3.3.1 ``` This is the first bugfix release of the 3.3.x series. This release contains several critical bug-fixes: * fix docstring import issues when running Python with optimization * fix `hist` with categorical data, such as with Pandas * fix install on BSD systems * fix nbagg compatibility with Chrome 84+ * fix ordering of scatter marker size in 3D plots * fix performance regression when plotting `Path`s * fix reading from URL in `imread` * fix several regressions with new date epoch handling * fix some bad constrained and tight layout interactions with colorbars * fix use of customized toolbars in TkAgg and WXAgg backends ``` ### 3.3.0 ``` Highlights of this release include: - Provisional API for composing semantic axes layouts from text or nested lists - New Axes.sharex, Axes.sharey methods - Turbo colormap - colors.BoundaryNorm supports extend keyword argument - Text color for legend labels - Pcolor and Pcolormesh now accept shading='nearest' and 'auto' - Allow tick formatters to be set with str or function inputs - New Axes.axline method - Dates use a modern epoch - Improved font weight detection - Axes3D no longer distorts the 3D plot to match the 2D aspect ratio - More consistent toolbar behavior across backends - Toolbar icons are now styled for dark themes - Cursor text now uses a number of significant digits matching pointing precision - Functions to compute a Path's size - savefig() gained a backend keyword argument - Saving SVG now supports adding metadata - Saving PDF metadata via PGF now consistent with PDF backend - NbAgg and WebAgg no longer use jQuery & jQuery UI For the full details please see the [What's New](https://matplotlib.org/3.3.0/users/whats_new.html) and [API changes](https://matplotlib.org/3.3.0/api/api_changes.html) in the documentation. ```
Links - PyPI: https://pypi.org/project/matplotlib - Changelog: https://pyup.io/changelogs/matplotlib/ - Homepage: https://matplotlib.org

Update PyAstronomy from 0.13.0 to 0.15.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/pyastronomy - Changelog: https://pyup.io/changelogs/pyastronomy/ - Repo: https://github.com/sczesla/PyAstronomy

Update pytest from 5.4.3 to 6.0.1.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/pytest - Homepage: https://docs.pytest.org/en/latest/

Update pytest-cov from 2.10.0 to 2.10.1.

Changelog ### 2.10.1 ``` ------------------- * Support for ``pytest-xdist`` 2.0, which breaks compatibility with ``pytest-xdist`` before 1.22.3 (from 2017). Contributed by Zac Hatfield-Dodds in `412 <https://github.com/pytest-dev/pytest-cov/pull/412>`_. * Fixed the ``LocalPath has no attribute startswith`` failure that occurred when using the ``pytester`` plugin in inline mode. ```
Links - PyPI: https://pypi.org/project/pytest-cov - Changelog: https://pyup.io/changelogs/pytest-cov/ - Repo: https://github.com/pytest-dev/pytest-cov

Update pytest-xdist from 1.32.0 to 2.1.0.

Changelog ### 2.1.0 ``` =============================== Features -------- - `585 <https://github.com/pytest-dev/pytest-xdist/issues/585>`_: New ``pytest_xdist_auto_num_workers`` hook can be implemented by plugins or ``conftest.py`` files to control the number of workers when ``--numprocesses=auto`` is given in the command-line. Trivial Changes --------------- - `585 <https://github.com/pytest-dev/pytest-xdist/issues/585>`_: ``psutil`` has proven to make ``pytest-xdist`` installation in certain platforms and containers problematic, so to use it for automatic number of CPUs detection users need to install the ``psutil`` extra:: pip install pytest-xdist[psutil] ``` ### 2.0.0 ``` =============================== Deprecations and Removals ------------------------- - `541 <https://github.com/pytest-dev/pytest-xdist/issues/541>`_: Drop backward-compatibility "slave" aliases related to worker nodes. We deliberately moved away from this terminology years ago, and it seems like the right time to finish the deprecation and removal process. - `569 <https://github.com/pytest-dev/pytest-xdist/issues/569>`_: ``pytest-xdist`` no longer supports Python 2.7. Features -------- - `504 <https://github.com/pytest-dev/pytest-xdist/issues/504>`_: New functions ``xdist.is_xdist_worker``, ``xdist.is_xdist_master``, ``xdist.get_xdist_worker_id``, to easily identify the current node. Bug Fixes --------- - `471 <https://github.com/pytest-dev/pytest-xdist/issues/471>`_: Fix issue with Rsync reporting in quiet mode. - `553 <https://github.com/pytest-dev/pytest-xdist/issues/553>`_: When using ``-n auto``, count the number of physical CPU cores instead of logical ones. Trivial Changes --------------- - `541 <https://github.com/pytest-dev/pytest-xdist/issues/541>`_: ``pytest-xdist`` now requires ``pytest>=6.0``. ``` ### 1.34.0 ``` ================================ Features -------- - `549 <https://github.com/pytest-dev/pytest-xdist/issues/549>`_: Make ``--pdb`` imply ``--dist no``, as the two options cannot really work together at the moment. Bug Fixes --------- - `478 <https://github.com/pytest-dev/pytest-xdist/issues/478>`_: Fix regression with duplicated arguments via $PYTEST_ADDOPTS in 1.30.0. - `558 <https://github.com/pytest-dev/pytest-xdist/issues/558>`_: Fix ``rsyncdirs`` usage with pytest 6.0. - `562 <https://github.com/pytest-dev/pytest-xdist/issues/562>`_: Do not trigger the deprecated ``pytest_warning_captured`` in pytest 6.0+. ``` ### 1.33.0 ``` ================================ Features -------- - `554 <https://github.com/pytest-dev/pytest-xdist/issues/554>`_: Fix warnings support for upcoming pytest 6.0. Trivial Changes --------------- - `548 <https://github.com/pytest-dev/pytest-xdist/issues/548>`_: SCM and CI files are no longer included in the source distribution. ```
Links - PyPI: https://pypi.org/project/pytest-xdist - Changelog: https://pyup.io/changelogs/pytest-xdist/ - Repo: https://github.com/pytest-dev/pytest-xdist
pyup-bot commented 4 years ago

Closing this in favor of #171