search

DanielAndreasen / SWEETer-Cat

Make SWEET-Cat sweet again
http://sweetercat.herokuapp.com/
MIT License
12 stars 1 forks source link

Scheduled monthly dependency update for May #188

Closed pyup-bot closed 2 years ago

pyup-bot commented 2 years ago

Update click from 8.0.4 to 8.1.3.

Changelog ### 8.1.3 ``` ------------- Released 2022-04-28 - Use verbose form of ``typing.Callable`` for ``command`` and ``group``. :issue:`2255` - Show error when attempting to create an option with ``multiple=True, is_flag=True``. Use ``count`` instead. :issue:`2246` ``` ### 8.1.2 ``` ------------- Released 2022-03-31 - Fix error message for readable path check that was mixed up with the executable check. :pr:`2236` - Restore parameter order for ``Path``, placing the ``executable`` parameter at the end. It is recommended to use keyword arguments instead of positional arguments. :issue:`2235` ``` ### 8.1.1 ``` ------------- Released 2022-03-30 - Fix an issue with decorator typing that caused type checking to report that a command was not callable. :issue:`2227` ``` ### 8.1.0 ``` ------------- Released 2022-03-28 - Drop support for Python 3.6. :pr:`2129` - Remove previously deprecated code. :pr:`2130` - ``Group.resultcallback`` is renamed to ``result_callback``. - ``autocompletion`` parameter to ``Command`` is renamed to ``shell_complete``. - ``get_terminal_size`` is removed, use ``shutil.get_terminal_size`` instead. - ``get_os_args`` is removed, use ``sys.argv[1:]`` instead. - Rely on :pep:`538` and :pep:`540` to handle selecting UTF-8 encoding instead of ASCII. Click's locale encoding detection is removed. :issue:`2198` - Single options boolean flags with ``show_default=True`` only show the default if it is ``True``. :issue:`1971` - The ``command`` and ``group`` decorators can be applied with or without parentheses. :issue:`1359` - The ``Path`` type can check whether the target is executable. :issue:`1961` - ``Command.show_default`` overrides ``Context.show_default``, instead of the other way around. :issue:`1963` - Parameter decorators and ``group`` handles ``cls=None`` the same as not passing ``cls``. ``option`` handles ``help=None`` the same as not passing ``help``. :issue:`1959` - A flag option with ``required=True`` requires that the flag is passed instead of choosing the implicit default value. :issue:`1978` - Indentation in help text passed to ``Option`` and ``Command`` is cleaned the same as using the ``option`` and ``command`` decorators does. A command's ``epilog`` and ``short_help`` are also processed. :issue:`1985` - Store unprocessed ``Command.help``, ``epilog`` and ``short_help`` strings. Processing is only done when formatting help text for output. :issue:`2149` - Allow empty str input for ``prompt()`` when ``confirmation_prompt=True`` and ``default=""``. :issue:`2157` - Windows glob pattern expansion doesn't fail if a value is an invalid pattern. :issue:`2195` - It's possible to pass a list of ``params`` to ``command``. Any params defined with decorators are appended to the passed params. :issue:`2131`. - ``command`` decorator is annotated as returning the correct type if a ``cls`` argument is used. :issue:`2211` - A ``Group`` with ``invoke_without_command=True`` and ``chain=False`` will invoke its result callback with the group function's return value. :issue:`2124` - ``to_info_dict`` will not fail if a ``ParamType`` doesn't define a ``name``. :issue:`2168` - Shell completion prioritizes option values with option prefixes over new options. :issue:`2040` - Options that get an environment variable value using ``autoenvvar_prefix`` treat an empty value as ``None``, consistent with a direct ``envvar``. :issue:`2146` ```
Links - PyPI: https://pypi.org/project/click - Changelog: https://pyup.io/changelogs/click/ - Homepage: https://palletsprojects.com/p/click/

Update Flask from 2.0.3 to 2.1.2.

Changelog ### 2.1.2 ``` ------------- Released 2022-04-28 - Fix type annotation for ``json.loads``, it accepts str or bytes. :issue:`4519` - The ``--cert`` and ``--key`` options on ``flask run`` can be given in either order. :issue:`4459` ``` ### 2.1.1 ``` ------------- Released on 2022-03-30 - Set the minimum required version of importlib_metadata to 3.6.0, which is required on Python < 3.10. :issue:`4502` ``` ### 2.1.0 ``` ------------- Released 2022-03-28 - Drop support for Python 3.6. :pr:`4335` - Update Click dependency to >= 8.0. :pr:`4008` - Remove previously deprecated code. :pr:`4337` - The CLI does not pass ``script_info`` to app factory functions. - ``config.from_json`` is replaced by ``config.from_file(name, load=json.load)``. - ``json`` functions no longer take an ``encoding`` parameter. - ``safe_join`` is removed, use ``werkzeug.utils.safe_join`` instead. - ``total_seconds`` is removed, use ``timedelta.total_seconds`` instead. - The same blueprint cannot be registered with the same name. Use ``name=`` when registering to specify a unique name. - The test client's ``as_tuple`` parameter is removed. Use ``response.request.environ`` instead. :pr:`4417` - Some parameters in ``send_file`` and ``send_from_directory`` were renamed in 2.0. The deprecation period for the old names is extended to 2.2. Be sure to test with deprecation warnings visible. - ``attachment_filename`` is renamed to ``download_name``. - ``cache_timeout`` is renamed to ``max_age``. - ``add_etags`` is renamed to ``etag``. - ``filename`` is renamed to ``path``. - The ``RequestContext.g`` property is deprecated. Use ``g`` directly or ``AppContext.g`` instead. :issue:`3898` - ``copy_current_request_context`` can decorate async functions. :pr:`4303` - The CLI uses ``importlib.metadata`` instead of ``setuptools`` to load command entry points. :issue:`4419` - Overriding ``FlaskClient.open`` will not cause an error on redirect. :issue:`3396` - Add an ``--exclude-patterns`` option to the ``flask run`` CLI command to specify patterns that will be ignored by the reloader. :issue:`4188` - When using lazy loading (the default with the debugger), the Click context from the ``flask run`` command remains available in the loader thread. :issue:`4460` - Deleting the session cookie uses the ``httponly`` flag. :issue:`4485` - Relax typing for ``errorhandler`` to allow the user to use more precise types and decorate the same function multiple times. :issue:`4095, 4295, 4297` - Fix typing for ``__exit__`` methods for better compatibility with ``ExitStack``. :issue:`4474` - From Werkzeug, for redirect responses the ``Location`` header URL will remain relative, and exclude the scheme and domain, by default. :pr:`4496` - Add ``Config.from_prefixed_env()`` to load config values from environment variables that start with ``FLASK_`` or another prefix. This parses values as JSON by default, and allows setting keys in nested dicts. :pr:`4479` ```
Links - PyPI: https://pypi.org/project/flask - Changelog: https://pyup.io/changelogs/flask/ - Homepage: https://palletsprojects.com/p/flask

Update itsdangerous from 2.1.0 to 2.1.2.

Changelog ### 2.1.2 ``` ------------- Released 2022-03-24 - Handle date overflow in timed unsign on 32-bit systems. :pr:`299` ``` ### 2.1.1 ``` ------------- Released 2022-03-09 - Handle date overflow in timed unsign. :pr:`296` ```
Links - PyPI: https://pypi.org/project/itsdangerous - Changelog: https://pyup.io/changelogs/itsdangerous/ - Homepage: https://palletsprojects.com/p/itsdangerous/

Update MarkupSafe from 2.1.0 to 2.1.1.

Changelog ### 2.1.1 ``` ------------- Released 2022-03-14 - Avoid ambiguous regex matches in ``striptags``. :pr:`293` ```
Links - PyPI: https://pypi.org/project/markupsafe - Changelog: https://pyup.io/changelogs/markupsafe/ - Homepage: https://palletsprojects.com/p/markupsafe/

Update numpy from 1.22.2 to 1.22.3.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/numpy - Homepage: https://www.numpy.org

Update pandas from 1.4.1 to 1.4.2.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/pandas - Homepage: https://pandas.pydata.org

Update astropy from 5.0.1 to 5.0.4.

Changelog ### 5.0.4 ``` ========================== Bug Fixes --------- astropy.modeling ^^^^^^^^^^^^^^^^ - Fixed the ``Gaussian2D`` ``bounding_box`` when ``theta`` is an angular ``Quantity``. [13021] astropy.utils ^^^^^^^^^^^^^ - Reverted ``astropy.utils.iers.iers.IERS_A_URL`` to ``maia.usno.navy.mil`` domain instead of NASA FTP to work around server issues. [13004] Other Changes and Additions --------------------------- - Updated bundled WCSLIB to version 7.9 with several bugfixes and added support for time coordinate axes in ``wcsset()`` and ``wcssub()``. The four-digit type code for the time axis will have the first digit set to 4, i.e., four digit code will be 4xxx where x is a digit 0-9. For a full list of bug fixes see https://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES [#12994] ``` ### 5.0.3 ``` ========================== Bug Fixes --------- astropy.convolution ^^^^^^^^^^^^^^^^^^^ - Bugfix in ``astropy.convolution.utils.discretize_model`` which allows the function to handle a ``CompoundModel``. Before this fix, ``discretize_model`` was confusing ``CompoundModel`` with a callable function. [12959] astropy.io.fits ^^^^^^^^^^^^^^^ - Fix write and read FITS tables with multidimensional items, using ``from_columns`` without previousely defined ``ColDefs`` structure. [12863] astropy.io.votable ^^^^^^^^^^^^^^^^^^ - Fix VOTable linting to avoid use of shell option. [12985] astropy.utils ^^^^^^^^^^^^^ - Fix XML linting to avoid use of shell option. [12985] Other Changes and Additions --------------------------- - Updated the bundled CFITSIO library to 4.1.0. [12967] ``` ### 5.0.2 ``` ========================== Bug Fixes --------- astropy.io.ascii ^^^^^^^^^^^^^^^^ - Bugfix to add backwards compatibility for reading ECSV version 0.9 files with non-standard column datatypes (such as ``object``, ``str``, ``datetime64``, etc.), which would raise a ValueError in ECSV version 1.0. [12880] astropy.io.misc ^^^^^^^^^^^^^^^ - Bugfix for ``units_mapping`` schema's property name conflicts. Changes: * ``inputs`` to ``unit_inputs`` * ``outputs`` to ``unit_outputs`` [12800] astropy.io.votable ^^^^^^^^^^^^^^^^^^ - Fixed a bug where ``astropy.io.votable.validate`` was printing output to ``sys.stdout`` when the ``output`` paramter was set to ``None``. ``validate`` now returns a string when ``output`` is set to ``None``, as documented. [12604] astropy.modeling ^^^^^^^^^^^^^^^^ - Fix handling of units on ``scale`` parameter in BlackBody model. [12318] - Indexing on models can now be used with all types of integers (like ``numpy.int64``) instead of just ``int``. [12561] - Fix computation of the separability of a ``CompoundModel`` where another ``CompoundModel`` is on the right hand side of the ``&`` operator. [12907] - Provide a hook (``Model._calculate_separability_matrix``) to allow subclasses of ``Model`` to define how to compute their separability matrix. [12900] astropy.stats ^^^^^^^^^^^^^ - Fixed a bug in which running ``kuiper_false_positive_probability(D,N)`` on distributions with many data points could produce NaN values for the false positive probability of the Kuiper statistic. [12896] astropy.wcs ^^^^^^^^^^^ - Fixed a bug due to which ``naxis``, ``pixel_shape``, and ``pixel_bounds`` attributes of ``astropy.wcs.WCS`` were not restored when an ``astropy.wcs.WCS`` object was unpickled. This fix also eliminates ``FITSFixedWarning`` warning issued during unpiclikng of the WCS objects related to the number of axes. This fix also eliminates errors when unpickling WCS objects originally created using non-default values for ``key``, ``colsel``, and ``keysel`` parameters. [12844] ```
Links - PyPI: https://pypi.org/project/astropy - Changelog: https://pyup.io/changelogs/astropy/ - Homepage: http://astropy.org

Update pytest from 7.0.1 to 7.1.2.

Changelog ### 7.1.2 ``` ========================= Bug Fixes --------- - `9726 <https://github.com/pytest-dev/pytest/issues/9726>`_: An unnecessary ``numpy`` import inside :func:`pytest.approx` was removed. - `9820 <https://github.com/pytest-dev/pytest/issues/9820>`_: Fix comparison of ``dataclasses`` with ``InitVar``. - `9869 <https://github.com/pytest-dev/pytest/issues/9869>`_: Increase ``stacklevel`` for the ``NODE_CTOR_FSPATH_ARG`` deprecation to point to the user's code, not pytest. - `9871 <https://github.com/pytest-dev/pytest/issues/9871>`_: Fix a bizarre (and fortunately rare) bug where the `temp_path` fixture could raise an internal error while attempting to get the current user's username. ``` ### 7.1.1 ``` ========================= Bug Fixes --------- - `9767 <https://github.com/pytest-dev/pytest/issues/9767>`_: Fixed a regression in pytest 7.1.0 where some conftest.py files outside of the source tree (e.g. in the `site-packages` directory) were not picked up. ``` ### 7.1.0 ``` ========================= Breaking Changes ---------------- - `8838 <https://github.com/pytest-dev/pytest/issues/8838>`_: As per our policy, the following features have been deprecated in the 6.X series and are now removed: * ``pytest._fillfuncargs`` function. * ``pytest_warning_captured`` hook - use ``pytest_warning_recorded`` instead. * ``-k -foobar`` syntax - use ``-k 'not foobar'`` instead. * ``-k foobar:`` syntax. * ``pytest.collect`` module - import from ``pytest`` directly. For more information consult `Deprecations and Removals <https://docs.pytest.org/en/latest/deprecations.html>`__ in the docs. - `9437 <https://github.com/pytest-dev/pytest/issues/9437>`_: Dropped support for Python 3.6, which reached `end-of-life <https://devguide.python.org/#status-of-python-branches>`__ at 2021-12-23. Improvements ------------ - `5192 <https://github.com/pytest-dev/pytest/issues/5192>`_: Fixed test output for some data types where ``-v`` would show less information. Also, when showing diffs for sequences, ``-q`` would produce full diffs instead of the expected diff. - `9362 <https://github.com/pytest-dev/pytest/issues/9362>`_: pytest now avoids specialized assert formatting when it is detected that the default ``__eq__`` is overridden in ``attrs`` or ``dataclasses``. - `9536 <https://github.com/pytest-dev/pytest/issues/9536>`_: When ``-vv`` is given on command line, show skipping and xfail reasons in full instead of truncating them to fit the terminal width. - `9644 <https://github.com/pytest-dev/pytest/issues/9644>`_: More information about the location of resources that led Python to raise :class:`ResourceWarning` can now be obtained by enabling :mod:`tracemalloc`. See :ref:`resource-warnings` for more information. - `9678 <https://github.com/pytest-dev/pytest/issues/9678>`_: More types are now accepted in the ``ids`` argument to ``pytest.mark.parametrize``. Previously only `str`, `float`, `int` and `bool` were accepted; now `bytes`, `complex`, `re.Pattern`, `Enum` and anything with a `__name__` are also accepted. - `9692 <https://github.com/pytest-dev/pytest/issues/9692>`_: :func:`pytest.approx` now raises a :class:`TypeError` when given an unordered sequence (such as :class:`set`). Note that this implies that custom classes which only implement ``__iter__`` and ``__len__`` are no longer supported as they don't guarantee order. Bug Fixes --------- - `8242 <https://github.com/pytest-dev/pytest/issues/8242>`_: The deprecation of raising :class:`unittest.SkipTest` to skip collection of tests during the pytest collection phase is reverted - this is now a supported feature again. - `9493 <https://github.com/pytest-dev/pytest/issues/9493>`_: Symbolic link components are no longer resolved in conftest paths. This means that if a conftest appears twice in collection tree, using symlinks, it will be executed twice. For example, given tests/real/conftest.py tests/real/test_it.py tests/link -> tests/real running ``pytest tests`` now imports the conftest twice, once as ``tests/real/conftest.py`` and once as ``tests/link/conftest.py``. This is a fix to match a similar change made to test collection itself in pytest 6.0 (see :pull:`6523` for details). - `9626 <https://github.com/pytest-dev/pytest/issues/9626>`_: Fixed count of selected tests on terminal collection summary when there were errors or skipped modules. If there were errors or skipped modules on collection, pytest would mistakenly subtract those from the selected count. - `9645 <https://github.com/pytest-dev/pytest/issues/9645>`_: Fixed regression where ``--import-mode=importlib`` used together with :envvar:`PYTHONPATH` or :confval:`pythonpath` would cause import errors in test suites. - `9708 <https://github.com/pytest-dev/pytest/issues/9708>`_: :fixture:`pytester` now requests a :fixture:`monkeypatch` fixture instead of creating one internally. This solves some issues with tests that involve pytest environment variables. - `9730 <https://github.com/pytest-dev/pytest/issues/9730>`_: Malformed ``pyproject.toml`` files now produce a clearer error message. ```
Links - PyPI: https://pypi.org/project/pytest - Changelog: https://pyup.io/changelogs/pytest/ - Homepage: https://docs.pytest.org/en/latest/