DanilKrivonos
commented
10 months ago Hello, Your sequence has an ambiguous N position. FunFun can predict gene content only for sequences that contain only ATGC. Thanks for the question, Danil
Open gastronaut82 opened 10 months ago
DanilKrivonos
commented
10 months ago Hello, Your sequence has an ambiguous N position. FunFun can predict gene content only for sequences that contain only ATGC. Thanks for the question, Danil
Hi there, I have been using FunFun but got this error - could you help?
Traceback (most recent call last): File "/cluster/home/sjangi01/.local/bin/funfun", line 8, in
sys.exit(main())
File "/cluster/home/sjangi01/.local/lib/python3.8/site-packages/FunFun/FunFun.py", line 92, in main
Ortology_group, Meta_micom, non_pred = get_matrix(its, base, Ortology_group, functionality, Meta_micom, non_pred, K, e)
File "/cluster/home/sjangi01/.local/lib/python3.8/site-packages/FunFun/src/Get_distance.py", line 97, in get_matrix
marker_frequence = list(get_kmers_fereq(its.seq, k=5).values())
File "/cluster/home/sjangi01/.local/lib/python3.8/site-packages/FunFun/src/Get_distance.py", line 50, in get_kmers_fereq
kmers[str(seq[start: end])] += 1
KeyError: 'TTTTN'