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Danis102 / seqpac

seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts
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merging PAC with TRUE/FALSE or as value #15

Open signeskog opened 3 years ago

signeskog commented 3 years ago

In some functions (like PAC_summary), merging with PAC is a true/false vector, whilst in other functions (like add_reanno) you provide the PAC list you want to merge with as a value. Maybe decide on one way and keep it constant for all functions?

Danis102 commented 3 years ago

This is done because some times a PAC object is needed for the function to run, while sometimes it is not. Every function will need some special consideration. All should be explained in the manual for each function. But I will keep this issue open in case we come up with a better alternative.