Danko-Lab / TED

a fully Bayesian approach to deconvolve tumor microenvironment
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error: undefined columns selected #27

Closed Chao-Guo-hub closed 2 years ago

Chao-Guo-hub commented 2 years ago

I am getting this error both on cloud and on-premises, can you answer it for me?Is there something wrong with my input file format?

error Error in checkForRemoteErrors(val) : 20 nodes produced errors; first error: undefined columns selected <<<

script tcga.ted <- run.Ted (ref.dat= t(mouse_sc_data_match), X=dog_bulk_data_match, cell.type.labels= cell_type$cell.type,

cell.subtype.labels= meta$cell.subtype,

tum.key="tumor",

input.type="scRNA", n.cores=20, pdf.name="bulk_RNA-seq") <<< my input

image image image

<<<

Maybe it's just a stupid mistake from a rookie. Looking forward to your response!