Open gaojunbin opened 3 months ago
Hi Junbin,
Apologies for the delayed response. I believe the negatives/positive datasets in that folder are defined following the methods section of the original dREG paper: https://www.nature.com/articles/nmeth.3329#Sec10
I'm uncertain as to where get_test_set0
is used, but it looks like the two function calls in the file you've linked use the correct get_test_set
arguments (lines 65 and 87).
Dear authors,
Thanks for your excellent work. I have read your codes but not found how to generate ground truth file (e.g.
***.negative.bed.rdata
,***.positive.bed.rdata
link,***. grocaptss.bed
link and so on). Can you give more information about the label generation process?I also found that there are two similar functions (
get_test_set
andget_test_set0
link), It seems thatget_test_set
is loaded directly from the positive and negative label files (mentioned above), so I cannot get more details. Is the process of generating negative samples the same asget_test_set0
?Further, I found that most of the main programs used
get_test_set
but the parameters passed were based on the definition ofget_test_set0
. Is the code update not completely completed link?Looking forward to your reply!
Best, Junbin