Data2Dynamics / d2d

a modeling environment tailored to parameter estimation in dynamical systems
https://github.com/Data2Dynamics/d2d
57 stars 29 forks source link

Missing Parameter in Crauste example #143

Closed jvanhoefer closed 4 years ago

jvanhoefer commented 4 years ago

I was just looking into your implementation of the Crauste Modell (Cell Systems 2017) and was wondering, why the parameter mu_EL was missing (and therefore the Reaction L+E -> L). I would have guessed, that the reaction "EarlyEffector -> " would have the propensity "mu_EL *EarlyEffector* LateEffector"

Is there a particular reason for this?

Thank you Jakob

LoosC commented 4 years ago

This is the final model used by Crauste et al. In Table S3 of the Cell Systems Paper you see that for this particular model the parameter mu_EL is 0 and thus not present in the model.

jvanhoefer commented 4 years ago

makes sense, thank you! :)