DataBiosphere / analysis_pipeline_WDL

Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.
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Stop duplicating inputs in LD Prune and Null Model #41

Closed aofarrel closed 3 years ago

aofarrel commented 3 years ago

Still gets duplicated in vcf-to-gds due to permissions issues. Tested and succeeds on Terra.

Includes a hotfix for vcf-to-gds; the final output's name has been corrected. It was copy-pasted from ld-prune and thus falsely implied the output was merged.

Represents v3.1.2 when/if merged.