Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.
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[assoc-agg] Bash syntax error if genome_build (and likely others) not specified in wdl_validate_inputs task #80
Easiest fix is probably to add a short string before both sides of the equality.
Seems to just be a syntax issue, but worth double-checking if outputs (rather, the lack thereof) are passed into subsequent tasks correctly.