Plate-based bundles cause accumulator overflow

[nadove-ucsc]

...for biomaterial_id and document_id.

diff --git a/src/azul/indexer/aggregate.py b/src/azul/indexer/aggregate.py
index ab29fb2a..d09be078 100644
--- a/src/azul/indexer/aggregate.py
+++ b/src/azul/indexer/aggregate.py
@@ -124,6 +124,8 @@ class SetAccumulator(Accumulator):
             else:
                 assert False
         else:
+            logger.warning('SetAccumulator reached max size of %d with value: %r',
+                           self.max_size, value)
             return False

     def get(self) -> list[Any]:

After running the unit tests with the above patch:

>>> grep 'SetAccumulator reached' '1_test (1).txt' | sed 's/.*value://' |  sort | uniq -c | sort
1  '2d0d630a-58dd-42f7-bd7e-579ebec98d48'
      1  '37925a3b-3bce-4876-bb29-745922b2c972'
      1  '42b114bb-27ee-4415-b046-7ee5581adc27'
      1  '51fb7eb7-a422-482e-a98e-c9e6f9628e97'
      1  '5d687d7c-8d96-4203-ad8e-d0668828ad37'
      1  '6a0f0064-ba67-43d6-985e-68d8edcf8c0b'
      1  '6d273f72-f55c-4c8e-b91e-29e762194c3f'
      1  '7fa6adde-000d-4360-9f45-2b5da4721f70'
      1  'afd0ea55-e710-4b46-bb05-2423e491b6f5'
      1  'b6dec4a6-2d9b-40ac-80c4-41dce01aea46'
      1  'bc5ba4f6-a3f1-4156-830f-11228df251bc'
      1  'c'
      1  'cc5a78a1-539f-4dec-80b6-62f35dcafd89'
      1  'f4183399-0e70-466e-8915-8e4481f9b7d1'
      2  '01f7c3d0-d4be-432d-aa25-8c7fbce20b49'
      2  '082e87ac-5cf6-4bad-bedb-5f6591b8f566'
      2  '08b799a0-59d8-4c69-87b3-fd239aef4197'
      2  '09424c38-f1b1-4abf-9d97-fffd5ba3ad4f'
      2  '0a811a33-4de1-4d96-9cf0-1ec315112ffe'
      2  '0b52914d-687b-44d1-9a70-a95df55ed502'
      2  '0dd65ce8-29ba-4341-9a93-eb2ca1f06c72'
      2  '0ebe30dd-102f-44ce-9a0b-82481c2956a5'
      2  '0f14c412-5014-4ac0-9a71-858b2f047777'
      2  '0f256ebf-f049-4d37-b175-7cb881748469'
      2  '10a02923-b945-43fe-97db-c984e06dc5a7'
      2  '1339c497-c686-4d8d-ae51-6b30cb3dd11e'
      2  '18791d9e-c0ae-4cb4-a9e6-b4ea4618f6d7'
      2  '1b9de729-00b5-493e-a801-0f4d35c7f060'
      2  '1_BM5_cells'
      2  '1_BM6_cells'
      2  '1_BM7_cells'
      2  '1_BM8_cells'
      2  '1d5a282b-b4b5-41dc-ab46-862476a87c18'
      2  '22ccc95d-d789-4398-a790-83f86bb420d8'
      2  '232174af-3ebf-4b3b-97fd-35547950c4c8'
      2  '27e030cc-b89e-41fc-b0c8-c3258a4b2c6e'
      2  '29fa4290-89db-46c6-a154-444c73fcc644'
      2  '2_BM5_cells'
      2  '2_BM6_cells'
      2  '2_BM7_cells'
      2  '2_BM8_cells'
      2  '37c79043-da4d-4745-91c4-9785d1d03a82'
      2  '37cad11b-c8c9-4d1f-b715-498b0f8d4b35'
      2  '3_BM5_cells'
      2  '3_BM7_cells'
      2  '44b8ad82-1109-4543-a534-a85b34c2c301'
      2  '48496fe2-090e-4253-ae04-3f3b0b520585'
      2  '4_BM5_cells'
      2  '4_BM6_cells'
      2  '4_BM7_cells'
      2  '4_BM8_cells'
      2  '550a7b77-96d1-41f1-99aa-66bc1e94d23e'
      2  '5680b7ac-d329-476b-85e6-05c39d3fb028'
      2  '5bd60c24-d76e-4fd6-bb82-115273cee157'
      2  '5_BM5_cells'
      2  '5_BM6_cells'
      2  '5_BM7_cells'
      2  '6_BM5_cells'
      2  '6_BM6_cells'
      2  '6_BM7_cells'
      2  '6_BM8_cells'
      2  '77b0da1a-1855-4f5f-a299-e5f28d881bdb'
      2  '7_BM5_cells'
      2  '7_BM6_cells'
      2  '7_BM7_cells'
      2  '7_BM8_cells'
      2  '7d72b943-9bbc-479c-af24-40b5f5c2fdb4'
      2  '866c75ad-acd4-4c6a-a234-c456393ee5f1'
      2  '8_BM7_cells'
      2  '8_BM8_cells'
      2  '8ec8f2f9-77b5-4fd7-a85b-38643009089c'
      2  '939b4152-d4b6-4374-9775-9f53eb16ad0f'
      2  '9eb0db90-5f70-4c03-b1c3-4709ddbfd9cb'
      2  'b0842f1d-b081-4ed5-ad1a-30b34015b62d'
      2  'b508258e-74d6-4c7e-adc2-ddda36ebfad7'
      2  'ba805a63-d347-4ac8-ad35-96f518204cc7'
      2  'beabff64-fd1b-4817-995e-b37403f2aea4'
      2  'c7520e50-f9bc-4626-a117-a78f394fc203'
      2  'c8a2fff6-4d1a-412b-a0a0-96e4fdd4af7c'
      2  'e45b8254-e077-4ac9-a8e6-1627eb42d5b4'
      2  'fc8be628-9c61-47c8-91b5-2b1ae427cf89'
      3  '0041bb77-8217-4707-adba-0ff4f0a75382'
      3  '0419e639-2762-4abb-b125-558a151d6580'
      3  '09bed9cb-5ea2-41f0-8d9b-5a985c096668'
      3  '1_BM5'
      3  '1_BM6'
      3  '1_BM7'
      3  '1_BM8'
      3  '2_BM5'
      3  '2_BM6'
      3  '2_BM7'
      3  '2_BM8'
      3  '2e7e4b93-2d6c-4359-804c-f8ca1e21c31c'
      3  '2ec6f4fb-5252-4480-9fe4-37355a3f106f'
      3  '3192908c-3f5f-41d8-8b55-6000dbb811cb'
      3  '3381994d-5624-4f5f-a574-01ad099c448c'
      3  '35e69b30-f6c1-4d90-a585-31d8b25bd2c6'
      3  '3_BM5'
      3  '3_BM7'
      3  '3f20a83f-f01c-41f2-acaf-3c111dfa5465'
      3  '4_BM5'
      3  '4_BM6'
      3  '4_BM7'
      3  '4_BM8'
      3  '536ba4f7-6694-4a31-8df1-0e6668ed10da'
      3  '548a75b4-ba45-4700-b7bb-656c3995c316'
      3  '58b0354a-acbf-4f82-aad3-dbc90b8b0258'
      3  '5_BM5'
      3  '5_BM6'
      3  '5_BM7'
      3  '5c38a229-495f-4b2b-8c62-af0814e4f002'
      3  '5f6b7460-214b-4371-9fc6-671bdd2afa72'
      3  '62a131e1-c415-460e-bc5b-75cca5d3323b'
      3  '6_BM5'
      3  '6_BM6'
      3  '6_BM7'
      3  '6_BM8'
      3  '7229676a-4449-4a2f-ac97-284eb599841c'
      3  '73bd1209-cfb5-420f-bd97-574ed9c7cd0e'
      3  '755cc233-9d9f-4d12-96e6-9d4dacde8a67'
      3  '7_BM5'
      3  '7_BM6'
      3  '7_BM7'
      3  '7_BM8'
      3  '7f0f3ad8-9052-4003-ac7d-4e2e509b85f5'
      3  '83b474d3-c20f-48f6-95a0-b0fa2269f14d'
      3  '8_BM7'
      3  '8_BM8'
      3  '90b34757-474f-42c3-9d31-683a5a0a84bd'
      3  '951a8ffc-69c5-4f7c-8ee8-39b76171f630'
      3  '99ba7224-aa3d-47f0-9ffd-3219240f1e45'
      3  '9bb08d39-3957-4ff7-a20d-cc45a1cb38ab'
      3  '9d8ba59f-f2e9-43e2-85e0-7095f5b09923'
      3  'a0e661e2-dac9-4004-9605-8307c15f831d'
      3  'a9653bd6-f808-4ebc-82cf-171d4c737ae9'
      3  'a9c40eb8-24b6-4436-a3d3-e8035e84f6ae'
      3  'a9e6e73a-a912-4a15-8a54-b449d2cb8288'
      3  'b1883730-3304-48c1-904b-eb90ab226168'
      3  'b3ce1085-08dc-42ff-a609-6968315327a8'
      3  'b49fb5d4-6f31-4b7d-827e-bc09ed30a167'
      3  'b7914794-f8a7-4fba-bb5b-10536eac7d8b'
      3  'b82065c6-8269-4d13-b8ae-d0fb3f26f77c'
      3  'bc583c0e-4336-43d4-a7da-dc7e1f72b50b'
      3  'be7a2637-26cf-48ba-bfc5-52fa945d2d88'
      3  'beb014f4-f54b-4c40-bc4f-347ebcb2c5ca'
      3  'c301901f-95cd-4a3e-a4df-761fa21e92af'
      3  'c374dcee-f665-4f86-b900-3af1b01dc503'
      3  'c6e6684d-41d2-4f1a-a992-72290baca715'
      3  'cfa1e5da-607e-49b6-aa0d-8f43702b971f'
      3  'd43c21e1-f672-4920-a8c5-7a32aeef1ce1'
      3  'd8c08782-6f69-4314-947c-1afe6928cbce'
      3  'dc31f31d-ab56-4025-9834-99be638a2d50'
      3  'ded9b30e-12df-4998-846a-7cef685e4bd6'
      3  'e23d96b7-a271-403e-a29e-b2bdb1949070'
      3  'e47e8c7c-b584-4e52-953d-3a4fbe7c3d24'
      3  'e6d0da8f-e666-4f29-b8d8-34d717188967'
      3  'e7b60260-7ae4-4d5a-b1a4-51622467e4b3'
      3  'f26c4715-5488-4d7f-ae0e-1c965128fbb1'
      3  'f2ab37e5-68dc-4782-8e18-6042750bd89f'
      3  'f3aea92a-a3e1-4130-9dbc-60d3757c549e'
      3  'f8b16856-e066-41f1-8289-2d08bc1791a8'
      3  'fa448898-f1ab-4f7b-b4f4-b5ffa34526ec'
      3  'fbd01573-ab66-45a1-9719-68a3df5d762f'
      3  'fd8aba0d-6299-43ce-abf4-28bb10754e92'
    792  '008b705b-7453-48fb-bb43-bfafb83aaecb'
    792  '00a7c1da-8a02-430e-bb98-e97ffcde034b'
    792  '00d3efd9-d219-4bc1-a58a-dc96f3f8500f'
    792  '03cf98ed-4baf-4f5d-976f-cd11a8dfefbe'
    792  '043813e3-e773-4237-819c-dc3517014aa9'
    792  '04a0bd98-c6b8-46bf-bd5f-21d56d8e0456'
    792  '04ef0085-f955-46ce-8876-28e06a1301f8'
    792  '052161ca-c389-4b9e-a6ae-6f2e37739988'
    792  '06744801-ce2b-4a8e-81ec-1ff4526d91df'
    792  '06c5f03b-41a5-4714-81f1-e915db3778ec'
    792  '070419ba-e292-4212-985e-59e6ca23c14a'
    792  '07299af5-1e56-4035-9cf4-50b30e4a19c1'
    792  '09cddb76-929b-4b6f-9f7f-8497df2a2e7b'
    792  '0c840278-1998-4d08-a5c8-76b8708130a8'
    792  '0d2939dd-07cf-4f2a-9a94-7952ca8f5b37'
    792  '0dba20ce-618c-4a70-8f6f-a584df044cb0'
    792  '0e1f39d3-c9a0-42b2-9d79-343e1c4d65fa'
    792  '0eedc57e-b68b-46ca-8d54-0303f36b588c'
    792  '10b3f94c-bcf3-41cd-9723-8a454299b000'
    792  '118738b2-b964-4ce9-92c2-99233a9bf1f6'
    792  '11ef6598-47b0-47b3-ab82-6522e920be48'
    792  '134e54ca-cce6-434b-868b-ef0b0b07a558'
    792  '14b09236-5ed7-4026-9b9a-92ebe564a6d3'
    792  '159777f7-04c9-45a4-9103-4c398ff33f63'
    792  '180347ed-c17b-44be-af2d-567400400b0a'
    792  '19f0efe4-effb-4110-9dae-5c69326fde4a'
    792  '1a314769-f4f4-43e5-8b8d-5ff4273c8599'
    792  '1b0bf5df-5fee-4a95-83ce-1f5d8edcdc63'
    792  '1b96601e-0cf5-4c57-9c51-aa2f0a86d916'
    792  '1d36033f-e83b-48a4-a2ef-605d6be305f9'
    792  '1fd40b0f-aca2-4455-b168-b15803319ab4'
    792  '20ad6581-b62c-4d01-8db9-48c0d09fa674'
    792  '21e86b75-1ee0-497d-8028-70eb6cd0c2a2'
    792  '2219ba4f-a802-43d5-a5b1-f3516ec1e148'
    792  '23357462-2a8f-46b2-bcc4-bb70bdb111d3'
    792  '2546ba98-ebc5-4bc5-87c9-f63e74e736dd'
    792  '260382a0-004b-42b7-aad9-2f512455a650'
    792  '27cc755e-524e-481a-8482-5f15e5dd07f4'
    792  '287984c5-d5f0-4b35-bce8-ccdea8cac79f'
    792  '2ac25968-e1d0-47b2-916d-0306ae790b01'
    792  '2d490b08-225c-47cc-aaa9-c8eaba61352f'
    792  '2e313cd2-7082-444a-8dd3-485a6b47ca56'
    792  '2e34c3fd-7d0d-43b4-8d95-01b7ea4145c2'
    792  '2fc1d678-e328-43bf-8141-237e34348dc0'
    792  '323bc866-e47a-45f9-be83-4152f1850b67'
    792  '329e2de1-fff2-468e-bec3-7e180a61cff6'
    792  '3370619c-1db3-4dec-b0ce-bd9226a0105c'
    792  '33de2519-03b7-4556-abf0-3e87df485928'
    792  '34012657-85b6-452f-8722-fd67f91faef3'
    792  '353c2625-7d6f-48ac-ab55-8327cbe22179'
    792  '3b0424a9-c041-49e8-80a4-d7e4006b1ca0'
    792  '3bc69d70-ef38-4b61-8741-3a188c18f702'
    792  '3c5a7203-cd7d-45a2-9780-9b083913a7a6'
    792  '3ccb5f99-c5ea-4c46-8c73-ee682fbd9e7e'
    792  '3d739e69-414d-4c6e-9332-d33645e5b2a1'
    792  '401ba2a2-d651-4d06-9ee9-1569a9253417'
    792  '40482eca-921a-4d5a-907d-876f3c8c6d40'
    792  '408e204d-aaa7-4b57-b2a9-5aa94a202b37'
    792  '40c7b4a0-24c0-4734-9bca-acd5c822bf4c'
    792  '418053f9-a3af-439b-8da4-9a87da9332fb'
    792  '42aabb76-48f8-4c72-b482-313ba07dc7a7'
    792  '44702201-4017-40b5-99b3-294cb18f6485'
    792  '4489f530-1179-47e6-a5a3-93a165b78b4f'
    792  '45040d9f-e84f-4a6c-ad2c-750d50a34b53'
    792  '450be104-d782-4f9a-a438-578c951c2686'
    792  '45bb9541-0bc1-48bb-99d4-8bb33c8c66ed'
    792  '45cbcff3-db91-4c4d-b233-ff480cbaa95e'
    792  '45f8303c-27ff-443f-a78e-38a55b260fe2'
    792  '4713375f-6f4a-4470-be90-6e7892d633ff'
    792  '479084d6-a6dc-4c25-88cc-901e9a0cbb77'
    792  '47fdca59-b1e6-4d0d-8a1a-fc8f16993684'
    792  '484bd756-a413-409f-8b8a-c3b67304d99c'
    792  '4904d265-343c-4511-8c1e-9f6127bb1240'
    792  '4940131a-be8e-4ba5-9c91-ef9dbdc81763'
    792  '49485ecc-2462-4e9b-85c5-2c928f959865'
    792  '4a6c2fc9-6ac6-49a1-abdc-746b43073d43'
    792  '4bca0fcb-1877-4b02-9145-1a5d767dae3b'
    792  '4c525eb9-61e9-4851-b075-1ff3b7607af0'
    792  '4c8ec421-0ec0-4097-afa3-4a87263e7d87'
    792  '4d9516b9-a40c-4556-aaf8-2fda570aca17'
    792  '4e43967a-bd73-4d99-8339-cc5d72622916'
    792  '4e512abf-defe-4d12-acd2-e10c0c6e3773'
    792  '4f42bb6d-1210-4b9a-834b-28aa78324651'
    792  '4fe13b1d-faf4-486e-983c-97b7d0470e9e'
    792  '50f3094c-d10c-4f78-98c8-0175bf1bc7cd'
    792  '512c61a9-d425-4c99-b386-a42648a6eab6'
    792  '516902a4-2792-497a-9fa9-9ff596ebcd0f'
    792  '51c8e3c8-042f-4253-aa48-3452ceaa9b90'
    792  '51d68613-d693-4005-abfc-2c7eee72c34b'
    792  '54e37fd6-41a4-4cec-9dd9-e722a155a09a'
    792  '54e7998e-1878-423a-97ad-b905ca7423e3'
    792  '5bc13124-4b0e-4359-bd43-ec3d9cd53724'
    792  '5bc3b7fe-ce90-437a-9695-fed4883c874e'
    792  '5be090a1-17fe-4fec-9608-a9e76b2a067e'
    792  '5ca1c842-5b21-4664-876c-e57e5c38ad61'
    792  '5ce04010-0a94-44a0-9de2-6a768db775de'
    792  '5d7fd1ca-6496-442c-a3e5-49aa586b7554'
    792  '5f099f7f-8fc4-40b4-badd-49f2e726cdb6'
    792  '5f968cb2-026f-49fe-abb5-ad7bbda8571f'
    792  '5fa8e3de-b96a-42e8-b5d9-cbc0c6a5b6a1'
    792  '614cb73f-7ed9-4ded-93a8-d7979f124550'
    792  '6223a9d9-c6e8-480f-9152-7e223c0f565d'
    792  '63d08fb8-6fb3-43cc-92af-b817dd67329b'
    792  '63df2596-d6e0-4021-abee-c112d79654d3'
    792  '6597f3ba-c522-47c9-934e-496129949ebf'
    792  '6622e56b-f509-40b6-a392-86e5d1107701'
    792  '673e9c5d-f467-4176-8e3d-165dec07cb35'
    792  '67575d18-ec23-4c84-adb7-21c72a9fb8da'
    792  '68a1d68a-a4b2-4a02-b9b4-eaa845325af9'
    792  '68fdb7c9-958e-4225-ade0-dc288ae397b1'
    792  '69904f6c-bd79-4416-aec9-01ca3ce9cf30'
    792  '699a476a-7284-4a6e-9f3c-c62e4fb076a6'
    792  '69bbeb43-a654-4a63-9744-5ff4fe1159ae'
    792  '6a47520c-90ca-4cef-8535-e57cdea14d02'
    792  '6b0839e9-1066-4a33-9e6d-1d808bbe0bcf'
    792  '7506eb7b-863c-49ad-8b54-b9c46f95f463'
    792  '7508c8ad-c6c0-4767-9ff0-2f705b1a6469'
    792  '755fca8f-3c4a-4b9f-9ae5-1a8aef3bd27e'
    792  '766f48ea-10ee-488d-bb12-511ae63e8c8b'
    792  '792cb5eb-6af3-48cb-b8f4-2ebae86d874f'
    792  '7a1d98cd-3955-424f-a882-4fd7bda39914'
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    792  'Hip9_well_4910'
    792  'Hip9_well_4911'
    792  'Hip9_well_4912'
    792  'Hip9_well_4913'
    792  'Hip9_well_4914'
    792  'Hip9_well_4915'
    792  'Hip9_well_4916'
    792  'Hip9_well_4917'
    792  'Hip9_well_4918'
    792  'Hip9_well_4919'
    792  'Hip9_well_4920'
    792  'Hip9_well_4921'
    792  'Hip9_well_4922'
    792  'Hip9_well_4923'
    792  'Hip9_well_4924'
    792  'Hip9_well_4925'
    792  'Hip9_well_4926'
    792  'Hip9_well_4927'
    792  'Hip9_well_4928'
    792  'Hip9_well_4929'
    792  'Hip9_well_4930'
    792  'Hip9_well_4931'
    792  'Hip9_well_4932'
    792  'Hip9_well_4933'
    792  'Hip9_well_4934'
    792  'Hip9_well_4935'
    792  'Hip9_well_4936'
    792  'Hip9_well_4937'
    792  'Hip9_well_4938'
    792  'Hip9_well_4939'
    792  'Hip9_well_4940'
    792  'Hip9_well_4941'
    792  'Hip9_well_4942'
    792  'Hip9_well_4943'
    792  'Hip9_well_4944'
    792  'Hip9_well_4945'
    792  'Hip9_well_4946'
    792  'Hip9_well_4947'
    792  'Hip9_well_4948'
    792  'Hip9_well_4949'
    792  'Hip9_well_4950'
    792  'Hip9_well_4951'
    792  'Hip9_well_4952'
    792  'Hip9_well_4953'
    792  'Hip9_well_4954'
    792  'Hip9_well_4955'
    792  'Hip9_well_4956'
    792  'Hip9_well_4957'
    792  'Hip9_well_4958'
    792  'Hip9_well_4959'
    792  'Hip9_well_4960'
    792  'Hip9_well_4961'
    792  'Hip9_well_4962'
    792  'Hip9_well_4963'
    792  'Hip9_well_4964'
    792  'Hip9_well_4965'
    792  'Hip9_well_4966'
    792  'Hip9_well_4967'
    792  'Hip9_well_4968'
    792  'Hip9_well_4969'
    792  'Hip9_well_4970'
    792  'Hip9_well_4971'
    792  'Hip9_well_4972'
    792  'Hip9_well_4973'
    792  'Hip9_well_4974'
    792  'Hip9_well_4975'
    792  'Hip9_well_4976'
    792  'Hip9_well_4977'
    792  'Hip9_well_4978'
    792  'Hip9_well_4979'
    792  'Hip9_well_4980'
    792  'Hip9_well_4981'
    792  'Hip9_well_4982'
    792  'Hip9_well_4983'
    792  'Hip9_well_4984'
    792  'Hip9_well_4985'
    792  'Hip9_well_4986'
    792  'Hip9_well_4987'
    792  'Hip9_well_4988'
    792  'Hip9_well_4989'
    792  'Hip9_well_4990'
    792  'Hip9_well_4991'
    792  'Hip9_well_4992'

[nadove-ucsc]

Many accumulators are size limited and we may wish to add the warning from the patch to all of them, after adjusting the size limit.