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DataBiosphere / data-store

AWS and GCP data storage system for genomic data.
https://dss.dev.ucsc-cgp-redwood.org
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Replace references to HCA CLI with DBio CLI #99

Closed chmreid closed 4 years ago

chmreid commented 4 years ago

Now that the Data Biosphere Data Store CLI tool is available on PyPI, we should replace any code in the data store that was previously relying on the hca command line tool with code that uses the dbio CLI instead.

chmreid commented 4 years ago

tests/infra/base_smoketest.py was the main location that was using the HCA CLI tool, but it looks like references to the old HCA tool were replaced with dbio already. Furthermore, this test will clone and build the dbio CLI tool itself, so requirements.txt does not need updating.

chmreid commented 4 years ago

Nothing to be done, closing