DataBiosphere newt-transformer issues

DataBiosphere / newt-transformer

Amphibious new data transformer to prepare various sources for CGP DSS Data Loader

Apache License 2.0

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issues

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Generate schema and add it to user_metadata under describedBy

#41 cricketsloan opened 6 years ago
0
Update sanitized fields

#40 jessebrennan closed 6 years ago
1
Assign a default value when no demographics are available

#39 david4096 closed 6 years ago
0
Sanitize values to null

#38 jessebrennan closed 6 years ago
1
Other file types

#37 david4096 opened 6 years ago
0
Reset empty string values to None (null) (resolves #35)

#36 jessebrennan closed 6 years ago
0
Gen3 export/transform produces inconsistent JSON value types

#35 jessebrennan closed 6 years ago
0
Update list of public fields

#34 jessebrennan closed 6 years ago
0
Test data bleach

#33 jessebrennan closed 6 years ago
0
Sanitize metadata using values of the same type

#32 mikebaumann closed 6 years ago
1
Sanitize data using values of the same type

#31 mikebaumann closed 6 years ago
0
Remove old transforming format

#30 jessebrennan opened 6 years ago
2
Problems with other datasets

#29 david4096 opened 6 years ago
0
Add program data close #25

#28 david4096 closed 6 years ago
3
Remove hard-coding of `program` and `project` from sanitizer (resolves #26)

#27 mikebaumann closed 6 years ago
0
Remove hard-coding of `program` and `project` name from sanitizer

#26 mikebaumann closed 6 years ago
1
Add `program` metadata

#25 mikebaumann closed 6 years ago
0
Changed `data_bleach.py` to retain `sample.submitter_id` (resolves #23)

#24 mikebaumann closed 6 years ago
0
Change data_bleach.py to retain sample.submitter_id

#23 mikebaumann opened 6 years ago
0
Add study and project metadata

#22 david4096 closed 6 years ago
1
Add demographic and sample metadata

#21 david4096 closed 6 years ago
0
Add script for sanitizing data

#20 jessebrennan closed 6 years ago
0
Make project pip installable

#19 jessebrennan closed 6 years ago
0
first release

#18 cricketsloan closed 6 years ago
0
Another input format

#17 cricketsloan opened 6 years ago
1
Improve unit tests and test data

#16 david4096 opened 6 years ago
0
Fix Travis link in README (resolves NEWT-18)

#15 jessebrennan closed 6 years ago
0
Travis link in readme is broken

#14 jessebrennan closed 6 years ago
1
Make release notes/release

#13 cricketsloan closed 6 years ago
0
Review DATS schema

#12 cricketsloan opened 6 years ago
0
Review DATS parser code

#11 cricketsloan opened 6 years ago
0
Integrate tests into loader

#10 cricketsloan opened 6 years ago
0
Create test output, transform!

#9 cricketsloan opened 6 years ago
1
Create test DATS

#8 cricketsloan opened 6 years ago
0
Make transformer pip-installable

#6 cricketsloan closed 6 years ago
0
Determine reusable DATS code

#7 cricketsloan opened 6 years ago
1
Add basic input validation

#5 cricketsloan opened 6 years ago
0
Create setup.py

#4 cricketsloan closed 6 years ago
0
Set up travis yml pypi upload

#3 cricketsloan closed 6 years ago
1
Document release process/setup accounts

#2 cricketsloan closed 6 years ago
0
Add a roadmap

#1 david4096 closed 6 years ago
0