Not clear what the problem is.... Graph serialization issue

[rduerr]

@htpvu It isn't clear what the error message that is displayed when attempting to generate a package really means as the format of the output isn't defined. Here is an example:

Error creating package. Error deserializing package tree: Did not serialize all triples! <ModelCom {urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dataconservancy.org/business-object-model#File; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasTitle "Map_Belcher_Islands_Sea_Ice_Conditions-Ippak.pdf"; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasModifiedDate "2009-11-20T17:55:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasSize "2382430"^^http://www.w3.org/2001/XMLSchema#long; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasFormat "info:pronom/fmt/18"; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasFormat "application/pdf"; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#hasCreateDate "2009-11-20T17:55:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime; urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b @http://dataconservancy.org/business-object-model#isMemberOf urn:uuid:980c0154-69ab-4b08-96b2-3a22517a7699; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://dataconservancy.org/business-object-model#File; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasTitle "Kattuk4.mp4"; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasModifiedDate "2010-02-13T22:17:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasSize "75472844"^^http://www.w3.org/2001/XMLSchema#long; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasFormat "info:pronom/fmt/199"; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasFormat "application/octet-stream"; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#hasCreateDate "2010-02-13T22:17:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime; urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379 @http://dataconservancy.org/business-object-model#isMemberOf urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7; urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5 @http://dataconservancy.org/business-object-model#hasCreateDate "2010-03-31T19:38:04Z"^^http://www.w3.org/2001/XMLSchema#dateTime...} | [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#File] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasTitle, "Map_Belcher_Islands_Sea_Ice_Conditions-Ippak.pdf"] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasModifiedDate, "2009-11-20T17:55:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasSize, "2382430"^^http://www.w3.org/2001/XMLSchema#long] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasFormat, "info:pronom/fmt/18"] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasFormat, "application/pdf"] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#hasCreateDate, "2009-11-20T17:55:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:6fe3ef9e-7b0b-4860-a684-2df0a744428b, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:980c0154-69ab-4b08-96b2-3a22517a7699] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#File] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasTitle, "Kattuk4.mp4"] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-02-13T22:17:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasSize, "75472844"^^http://www.w3.org/2001/XMLSchema#long] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasFormat, "info:pronom/fmt/199"] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasFormat, "application/octet-stream"] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-02-13T22:17:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-03-31T19:38:04Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:20729fd9-50dd-43a4-9cee-9f723812124b] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:72848a79-1f83-4373-a7d3-b6cdae4c9502] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasTitle, "Takatak_Interview"] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#DataItem] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-03-31T19:38:04Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8] [urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#File] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasTitle, "Takatak4.mp4"] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-03-25T02:09:28Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasSize, "67162427"^^http://www.w3.org/2001/XMLSchema#long] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasFormat, "info:pronom/fmt/199"] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasFormat, "application/octet-stream"] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-03-25T02:09:28Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:f2e97856-0496-4b3e-a337-bb011e7f90df, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#DataItem] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasTitle, "Ippak_Interview"] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-04-07T20:02:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-04-07T20:02:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:f41d6985-0bd0-46f7-8f3c-7146112e4568] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:3ca9b814-913e-4607-a69a-c24126cb2252] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:4bb3bc81-d1a6-44af-8af6-d98171520c1d] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:b16ff35a-992f-4b79-9e0c-75d71a946dec] [urn:uuid:cc3d50fe-4441-44b2-99c9-ac673c3cd05a, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:0c1910a6-0a42-4ba0-bfae-c443f22c81c5] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#File] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasTitle, "Takatak1.mp4"] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-03-24T23:40:14Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasSize, "84393701"^^http://www.w3.org/2001/XMLSchema#long] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasFormat, "info:pronom/fmt/199"] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasFormat, "application/octet-stream"] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-03-24T23:40:14Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:d89cdceb-8a38-42b5-a694-fb070f39429f, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#Collection] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://dataconservancy.org/business-object-model#hasTitle, "Lucassie_Takatak"] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-04-07T20:02:36Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:cc7cefda-f895-41d8-921f-66509275b3dd] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:f298cc83-34a6-4eeb-aed3-e554f7658cfb] [urn:uuid:bbc24351-ee1e-40a5-adaa-282ee2790aa3, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#File] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasTitle, "Takatak3.mp4"] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-03-25T01:26:58Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasSize, "85203040"^^http://www.w3.org/2001/XMLSchema#long] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasFormat, "info:pronom/fmt/199"] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasFormat, "application/octet-stream"] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-03-25T01:26:58Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:2285ddb9-0384-4f31-b4c7-12dfd15d99d8, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:a4ba0d7f-c8f1-4f1f-8de5-199b14651eb5] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasTitle, "Kattuk_Interview"] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:32433b63-548d-4d11-a6b8-7da4d3e0c2ed] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:14578d86-f734-45c8-afac-80a83b676116] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:0d2a1418-f40d-43a9-a21b-414b0e5705b2] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasModifiedDate, "2010-03-31T19:39:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:e9ea708c-ac25-46bf-9d4b-46ac2e53c379] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasCreateDate, "2010-03-31T19:39:34Z"^^http://www.w3.org/2001/XMLSchema#dateTime] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#DataItem] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#isMemberOf, urn:uuid:0abcf79f-a95c-4f4d-8ca2-bec5710aaf31] [urn:uuid:a48f2d8f-23fc-44f1-87be-f3beb6ae20e7, http://dataconservancy.org/business-object-model#hasMember, urn:uuid:e73bccea-697f-40e8-b781-fd236e9ab99f] [urn:uuid:8877fea4-ef13-4f25-9a7e-fec4cee708ff, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://dataconservancy.org/business-object-model#Metadata] [urn:uuid:8877fea4-ef13-4f25-9a7e-fec4cee708ff, http://dataconservancy.org/business-object-model#hasTitle, "Map_Belcher_Islands_Sea_Ice_Conditions-Takatak.pdf"] 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Now what is the issue? And how should it be fixed? This is on version 1.0.3

[emetsger]

Ugh. That's weird. @rduerr you don't happen to have a copy of the data that produced this kind of error do you? In a place I can access it and replicate the issue?

[rduerr]

Uhhh... that was a long time ago; but I might be able to figure it out... I'll try...

[emetsger]

Yeah, I understand :) A shot in the dark...

[rduerr]

@emetsger Well... I don't have any likely file or packages dating from that date (I even checked my Backup disks) or even a few weeks before it. My calendar says that I had a session with Peter Pulsifer that day where we were trying the whole package creation and ingest into DCS. So it is conceivable that actually the error message was something generated by Peter and then entered by me into github. We were using Zoom at the time, but I don't know if he had a recording or record of the chat or not. I'll ask.

[emetsger]

@rduerr Ok, it really isn't something that you need to dig too deep for. I just looked through the dump you posted, and pulled out some things which may be helpful in identifying the source, but if it isn't handy, no worries. We'll just keep this issue open in case it occurs again.

• Map_Belcher_Islands_Sea_Ice_Conditions-Ippak.pdf
• Takatak_Interview
• Takatak4.mp4
• Ippak_Interview
• Takatak1.mp4
• Lucassie_Takatak
• Takatak3.mp4

[rduerr]

Well those are all part of the Sanikiluaq project which you all have a copy of! So perhaps that will help…

Ruth

On Apr 6, 2017, at 7:57 PM, Elliot Metsger notifications@github.com wrote:

@rduerr https://github.com/rduerr Ok, it really isn't something that you need to dig too deep for. I just looked through the dump you posted, and pulled out some things which may be helpful in identifying the source, but if it isn't handy, no worries. We'll just keep this issue open in case it occurs again.

Map_Belcher_Islands_Sea_Ice_Conditions-Ippak.pdf Takatak_Interview Takatak4.mp4 Ippak_Interview Takatak1.mp4 Lucassie_Takatak Takatak3.mp4 — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/DataConservancy/dcs-packaging-tool/issues/20#issuecomment-292397988, or mute the thread https://github.com/notifications/unsubscribe-auth/ABeSvJDW6RfQ5jHKRCOlWD7_FnseHsgSks5rtZghgaJpZM4LTg8W.