MetaImage support

[michal367]

Reading and writing to MetaImage file (.mha)

[reviewpad[bot]]

AI-Generated Summary: This pull request introduces a new feature to write MetaImage files. The changes include:

1. Added a new file, DataWriter.hpp, that defines the writeToMetaImage function to write image data to a MetaImage file (.mha).
2. Implemented the writeToMetaImage function in DataWriter.cpp.
3. Added the necessary include statements in yagit.hpp to use the new writeToMetaImage function.
4. Modified DataReader.hpp to change the parameter name from 'file' to 'filepath'.
5. Updated the .gitignore file to ignore MetaImage and raw files.
6. Updated CMakeLists.txt to include the new DataWriter.cpp in the project.
7. Updated bar.bat to run various test executables.
8. Updated the examples (gamma25D.cpp, gamma2D.cpp, and gamma3DInterp.cpp) to save gamma indices to MetaImage files.
9. Added a temporary test file, testWriter.cpp, for testing purposes.

There are a total of 186 insertions and 13 deletions in this patch.

[grzanka]

@michal367 include in the README description how to run the examples, including metaimage

[reviewpad[bot]]

Reviewpad Report

:bangbang: Errors

• Unconventional commit detected: 'new data reader, data class and classic gamma implementation' (b7cb0404cb2924ba0ee73d6423bdece5fdfb2ea0)
• Unconventional commit detected: 'clean up, add getImageData3D and stats functions in ImageData' (f53f949dccdfc211e2f3c72316629d2bb1934654)
• Unconventional commit detected: 'add linear interpolations' (f87f7531df49206db79f48a28bd3c28e82848e4a)
• Unconventional commit detected: 'add examples and start code documentation' (69573ed09b999b975859a6974c04456e3d34e2ac)
• Unconventional commit detected: 'code documentation' (b27a11e10fadff0883701daaa738d8acf014f916)
• Unconventional commit detected: 'change templated ImageData to float ImageData' (d4025a054bbfde3213ec7a94d4154ed2e5be3d6c)
• Unconventional commit detected: 'remove manual tests' (7bbdb038f923e30685ff62d82b16c5efcf9b43b7)
• Unconventional commit detected: 'review fixes and clean up' (a79721a942404c11a32c8aeb2939b3b9abd2bc5e)
• Unconventional commit detected: 'change license message in source files' (4990609853be4e24e377b0a892ec541c9e2ebff3)
• Unconventional commit detected: 'update test.yml' (e87778972e89ddffe606e8094fc650065cd16125)
• Unconventional commit detected: 'update test.yml 2' (3643a58fa6ad441de75ab1af41093c167a5f3f26)
• Unconventional commit detected: 'change letter case' (3b674097500555215951ad90a4b0c35a952fc41e)
• Unconventional commit detected: 'update test.yml' (74b3b7b182645d0de1d67552d0c9e6b392808c87)
• Unconventional commit detected: 'Merge branch 'master' of https://github.com/DataMedSci/gi-yagit into new-implementation' (cd3f65dd7e6e26194fa0d038db0cc9ad092196e9)
• Unconventional commit detected: 'shorten structs member names' (1f2b33f442c0811a424b3ea023038fa7559ccd65)
• Unconventional commit detected: 'adapt code to c++17 standard' (46642676e1bec7aca5d3df18b657503146c8a38c)
• Unconventional commit detected: 'review fixes' (3a76212c3edd09c746265bf8a1df9ec0c871e3e2)
• Unconventional commit detected: 'add metaimage writer' (c98a91f4a183c7ad4481fffacf99e9fe7c60b83f)
• Unconventional commit detected: 'add metaimage reader' (f0dce86352a450c0c2936e13c01428a1bc346036)
• Unconventional commit detected: 'add bytes swap for 64-bit data and clean up' (9cc896539470c2d712eb60b5669e4e8ca471f1a9)
• Unconventional commit detected: 'tweak readme' (0bb6dcc633a2970b5124d0f4c71d937f44a4e05c)
• Unconventional commit detected: 'Merge branch 'master' of https://github.com/DataMedSci/gi-yagit into metaimage' (126277277d9c97d617832497dc09c6821dbf88bd)
• Unconventional commit detected: 'tweak readme' (bf354f23795ca0236177d505c202c2c817371f68)
• Unconventional commit detected: 'fix compilation warning' (9a823497888cbfdea6c97cbd3b2f27c66e11e695)
• Unconventional title detected: 'MetaImage support' illegal 'M' character in commit message type: col=00

:warning: Warnings

• Please link an issue to the pull request

[grzanka]

During build I've got this warning:

[ 57%] Building CXX object CMakeFiles/yagit.dir/src/DataReader.cpp.o
/home/grzanka/workspace/gi-yagit/new/src/DataReader.cpp: In function ‘yagit::ImageData yagit::DataReader::readMetaImage(const std::string&, bool)’:
/home/grzanka/workspace/gi-yagit/new/src/DataReader.cpp:526:18: warning: comparison of integer expressions of different signedness: ‘std::streamsize’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  526 |     if(bytesRead != bytes){
      |        ~~~~~~~~~~^~~~~~~~

[reviewpad[bot]]

📈 Pull Request Metrics

💻 Coding Time: 16 days 🛻 Pickup Time: 5 days 👀 Review Time: 1 minute