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DataSeer / dataseer-web

DataSeer web application
GNU General Public License v3.0
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implement new workflow route #165

Open timvines19 opened 3 years ago

timvines19 commented 3 years ago

This is an ideal workflow for the way DS is currently set up

1) Authors will upload their article via the 'Try DataSeer' page on the website, or it arrives via the B2X workflow from bioRxiv (or similar).

2) The article uploads automatically into the DS UI and the curator gets an email saying it's at the Metadata stage.

3) Curator checks the article to ensure that only valid data sentences are highlighted and that the data types are correct

4) Curator emails authors a link & asks them to come to the DS UI to check the selected data sentences

5) Authors enter the locations of their datasets & click Finish

6) Curator checks the results and either a) pushes it back to Metadata Validation for further work and emails the authors; or b) certifies the results and generates a DataSeer Open Data Certificate

7) the Certificate is uploaded to Zenodo. The certificate is machine readable and based on JATS. It contains the article metadata and the metadata about the location and type of the datasets. The authors and any other parties (e.g. the journal) are sent a 'congratulations' email and a link to the certificate.

8) Event data is sent to the DataCite API in the optimal format (https://datacite.org/eventdata.html)

NB this workflow implies that the act of uploading a paper generates an account for that user in the DS system. The system can use the Submitting Author email as the username and generate a random 10 character password. This information is sent to the user in the email specified in step 4

NicolasKieffer commented 3 years ago

I need more infos about step:

  1. The article uploads automatically into the DS UI and the curator gets an email saying it's at the Metadata stage.

How does dataseer-web guess which curator is concerned? All curators of given organisation are emailed?

  1. Curator emails authors a link & asks them to come to the DS UI to check the selected data sentences

Should I add button to automatically send this email?

  1. Authors enter the locations of their datasets & click Finish

Should an email be sent to concerned curator(s)?

timvines19 commented 3 years ago

I need more infos about step:

The article uploads automatically into the DS UI and the curator gets an email saying it's at the Metadata stage.

How does dataseer-web guess which curator is concerned? All curators of given organisation are emailed?

the email can just go to info@dataseer.ai for the moment and it can be assigned to a curator from there.

Curator emails authors a link & asks them to come to the DS UI to check the selected data sentences

Should I add button to automatically send this email?

that would be great

Authors enter the locations of their datasets & click Finish

Should an email be sent to concerned curator(s)?

yes please!

NicolasKieffer commented 3 years ago

Authors will upload their article via the 'Try DataSeer' page on the website, or it arrives via the B2X workflow from bioRxiv (or similar).

image

Multiple files

For the moment, the app do not handle multiple files. Could I have "use cases" involving multiple files?

Note : By default, multiple files will create multiple "documents" (one per file). Merge of multiple PDF is not handled.

Additional files

For the moment, the app do not handle "additional files". Could I have "use cases" involving (multiple) additional files?

This is a new version of an article DataSeer has already assessed

What the app should do in this case? (It just create a new document?)

NicolasKieffer commented 3 years ago

@timvines19

  1. Curator checks the results and either a) pushes it back to Metadata Validation for further work and emails the authors; or b) certifies the results and generates a DataSeer Open Data Certificate
  2. the Certificate is uploaded to Zenodo. The certificate is machine readable and based on JATS. It contains the article metadata and the metadata about the location and type of the datasets. The authors and any other parties (e.g. the journal) are sent a 'congratulations' email and a link to the certificate

Could I have a "template" of the "DataSeer Open Data Certificate"?

NicolasKieffer commented 3 years ago

@timvines19

  1. Event data is sent to the DataCite API in the optimal format (https://datacite.org/eventdata.html)

Could I have a more information about "the event data"? Is it something I have to trigger or it will be done by certificate upload??