Port global-workflow to S4

[DavidHuber-NOAA]

The global-workflow should be ported to S4.

Branch: port2s4_v15

Below is a checklist taken from the NOAA-EMC issue 5 for porting to Orion which I will use as a template:

• [ ] Library: test version of NCEPLIBS available
• [ ] Library: NCEPLIBS official location
• [x] Test: connection to GitHub
• [x] Build: NCEPLIBS (personal area)
• [ ] Build: NCEPLIBS (official area)
• [ ] Install: manage_externals manic-v1.1.8 tag (personal area)
• [ ] Install: manage_externals manic-v1.1.8 tag (official area)
• [ ] Test: manage_externals (checkout_externals)
• [ ] Build: FV3GFS (w/WW3)
• [ ] Build: EMC_post
• [ ] Build: ProdGSI
• [ ] Build: GLDAS
• [ ] Build: UFS_UTILS
• [ ] Build: obsproc
• [ ] Build: chgres_recenter
• [ ] Build: chgres_recenter_ncio
• [ ] Build: fbwndgfs
• [ ] Build: fv3nc2nemsio
• [ ] Build: gaussian_sfcanl
• [ ] Build: gfs_bufr
• [ ] Build: regrid_nemsio
• [ ] Build: supvit
• [ ] Build: syndat_getjtbul
• [ ] Build: syndat_maksynrc
• [ ] Build: syndat_qctropcy
• [ ] Build: tave
• [ ] Build: tocsbufr
• [ ] Build: vint
• [ ] Test: fv3gfs_chgres.sh
• [ ] Establish: "glopara" space
• [ ] Establish: FIX_DIR under "glopara"
• [ ] Establish: BASE_GIT under "glopara"
• [ ] Establish: BASE_SVN under "glopara"
• [ ] Establish: GDA under "glopara"
• [ ] Establish: obsproc_prep and obsproc_global under "glopara"
• [ ] Establish: Fit2Obs under "glopara"
• [ ] Establish: METplus
• [ ] Establish: ens_tracker under "glopara"
• [ ] Establish: copy produtil from Hera for rocoto viewer
• [ ] Create: standard S4 environment
• [ ] Add: system paths to config.base.emc.dyn
• [ ] Add: system to machine-setup.sh
• [ ] Add: system to modulefiles/module_setup.sh[csh].inc
• [ ] Add: system to setup_expt.py
• [ ] Add: system to setup_expt_fcstonly.py
• [ ] Add: system to setup_workflow.py
• [ ] Add: system to setup_workflow_fcstonly.py
• [ ] Add: system to workflow_utils.py
• [ ] Review: S4 module files for final modules and NCEPLIBS
• [ ] Test: run setup_expt.py
• [ ] Test: run setup_expt_fcstonly.py
• [ ] Test: run setup_workflow.py
• [ ] Test: run setup_workflow_fcstonly.py
• [ ] Test: crons
• [ ] Test: ROCOTO
• [ ] Test: gfsgetic job
• [ ] Test: gfsfv3ic job
• [ ] Test: gdas[gfs]fcst job
• [ ] Test: gdas[gfs]post job
• [ ] Test: gdasvrfy job
• [ ] Test: gfsvrfy job
• [ ] Test: METplus jobs
• [ ] Test: gdas[gfs]arch job
• [ ] Test: complete free-forecast
• [ ] Test: gdas[gfs]prep job
• [ ] Test: gdaseobs job
• [ ] Test: gdas[gfs]anal job
• [ ] Test: gdas[gfs]analcalc job
• [ ] Test: gdasanaldiag job
• [ ] Test: gdasgldas job
• [ ] Test: gdasediag job
• [ ] Test: gdaseomg job
• [ ] Test: gdaseupd job
• [ ] Test: gdasecen job
• [ ] Test: gdasesfc job
• [ ] Test: gdasefcs job
• [ ] Test: gdasepos job
• [ ] Test: gdas[gfs]waveinit job
• [ ] Test: gdas[gfs]waveprep job
• [ ] Test: gdas[gfs]wavepostsbs job
• [ ] Test: GSI monitoring jobs
• [ ] Test: Fit2Obs
• [ ] Test: ens_tracker
• [ ] Test: C96C48 cycled
• [ ] Test: C192C96 cycled
• [ ] Test: C384C192 cycled
• [ ] Test: C768C384 cycled
• [ ] Test: C96 ff
• [ ] Test: C192 ff
• [ ] Test: C384 ff
• [ ] Test: C768 ff
• [ ] Test: beta-testers
• [ ] Pre-commit testing: cycled and ff on Hera
• [ ] Pre-commit testing: cycled and ff on WCOSS-Cray
• [ ] Pre-commit testing: cycled and ff on WCOSS-Dell
• [ ] Perform review
• [ ] Supported in checkout: ufs-weather-model/fv3atm
• [ ] Supported in checkout: ProdGSI
• [ ] Supported in checkout: GLDAS
• [ ] Supported in checkout: EMC_post
• [ ] Supported in checkout: UFS_UTILS
• [ ] Supported in checkout: EMC_verif-global

[DavidHuber-NOAA]

I've tested many of the NCEP modules already, including nemsio, nemsiogfs, w3emc, bacio, gfsio, ip, landsfcutil, sfcio, sigio, sp, esmf, and w3nco. Still remaining are nceppost, pio, wgrib2, wrf_io, bufr, crtm, g2, g2tmpl, grib_util, prod_util, and udunits.

[DavidHuber-NOAA]

This issue has been moved to NOAA-EMC/global-workflow#138.