count.txt from the .dcc files

DavisLaboratory / GeoMXAnalysisWorkflow

GeoMX analysis workflow

https://davislaboratory.github.io/GeoMXAnalysisWorkflow/

Other

4 stars 3 forks source link

count.txt from the .dcc files #13

Open nitinmahajan20 opened 6 months ago

nitinmahajan20 commented 6 months ago

Hello,

Nice work!!

I just went through the article and the GitHub page, but I am not able to find how to get the three files mentioned, count.txt and other two as input. From the machine I have the .dcc and .stats files.

Thank you!!!

Margery0011 commented 3 months ago

Hi, I encountered the same problem, I am wondering have you solved it? thanks

hookoop commented 1 month ago

You have to open the dcc files in the nanostring analysis suite, from where you will get an excel file. For us, we divided this excel into count file, SampleAnnoFile, and featureAnnoFile based off of what columns we saw in the tutorial data. Worked well :)