Docker run won't work, can't view image

[raydioactive]

Hi, I've attempted installing this and viewing the markdown file but arriving at the same error no matter what I do:

#@ Title: GeoMX workflow Intro
## INSTALL PACKAGES from Bioconductor:
if (!require("BiocManager", quietly = TRUE))
  install.packages("BiocManager")

BiocManager::install(c("standR","edgeR","limma","msigdb","GSEABase","igraph","vissE","SpatialExperiment","scater"), force = TRUE)
#install geomx workshop
remotes::install_github("DavisLaboratory/GeoMXAnalysisWorkflow", build_vignettes = FALSE)
#build and load docker image
system("cmd.exe", input="docker run -e PASSWORD=password -p 8787:8787 ghcr.io/ningbioinfo/geomxanalysisworkflow:latest")

This is my script. I was able to install the packages, and even download the github repo. Running my docker command, I first had to install docker for desktop and it does work in other instances, but this is my error running the command provided: `

build and load docker image

system("cmd.exe", input="docker run -e PASSWORD=pass -p 8787:8787 ghcr.io/ningbioinfo/geomxanalysisworkflow:latest") Error in file(con, "w") : cannot open the connection In addition: Warning message: In file(con, "w") : cannot open file 'C:\Users\a\AppData\Local\Temp\RtmpamLcrZ\file119c74dc2180': No such file or directory `

Help? What am I missing here.

[rsemeraro]

Hi, I encountered the same problem, I am wondering have you solved it? thanks

[raydioactive]

Hi, I encountered the same problem, I am wondering have you solved it? thanks

Hi, sorry I didn't fix it I just ended up doing something else.