Open knadia07 opened 1 year ago
https://davislaboratory.github.io/GeoMXAnalysisWorkflow/articles/GeoMXAnalysisWorkflow.html#summary
Hi after following the tutorial above and putting in the same count, genemeta and metadata files, I kept getting this error:
countFile<-read_tsv("count1.txt") %>% as.data.frame() sampleAnnoFile<-read_tsv("metadata1.txt") %>% as.data.frame() featureAnnoFile<-read_tsv("genemeta1.txt") %>% as.data.frame()
spe <- readGeoMx(countFile, sampleAnnoFile, featureAnnoFile)
Error in [.data.frame(samplemeta_filtered, , coord.colnames) : undefined columns selected
[.data.frame
is there anything missing from the data.frame??
https://davislaboratory.github.io/GeoMXAnalysisWorkflow/articles/GeoMXAnalysisWorkflow.html#summary
Hi after following the tutorial above and putting in the same count, genemeta and metadata files, I kept getting this error:
countFile<-read_tsv("count1.txt") %>% as.data.frame() sampleAnnoFile<-read_tsv("metadata1.txt") %>% as.data.frame() featureAnnoFile<-read_tsv("genemeta1.txt") %>% as.data.frame()
Error in
[.data.frame(samplemeta_filtered, , coord.colnames) : undefined columns selectedis there anything missing from the data.frame??