Closed Bioinformatika-BWID closed 2 years ago
Hi @bioinformaticulus ,
Thanks for trying our tool.
A short example of creating a GeneSet object:
BiocManager::install("GSEABase")
BiocManager::install("GO.db")
library(GSEABase)
GeneSet(geneIds = c("geneName1","geneName2"), geneIdType=SymbolIdentifier())
To view more details of the GeneSet class
?GSEABase::GeneSet
And the error you had regarding GO would be resolved by installing the GO.db package BiocManager::install("GO.db")
Ruqian
Thank you very much, I will try that now.
Hi, Can you kindly show me the code you used to create tgfb_gs_up? I am trying to create a geneset object for analysis in singscore and it is proving impossible because it is not clear what line of code you used.
I used this line of code and got the following error.
Kind regards