Inquiry about Normalization Process

[jheonsuh]

Hi. Thank you for developing helpful package for analysing GeoMx datasets. I have question that the vignette does not say in detail.

After normalizing my dataset using

spe_tmm <- geomxNorm(spe, method = "TMM")

How can I check the "Normalized" value of my initial dataset, which may be contained in "spe_tmm" object.

Since I need every single normalized value of gene counts, I wonder how can I check those.

It would be really grateful if you kindly give any advice about my question.

Thank you.

[ningbioinfo]

assay(spe_tmm, "logcounts")