call and genotype Sv with population

DecodeGenetics / graphtyper

Population-scale genotyping using pangenome graphs

http://dx.doi.org/10.1038/ng.3964

MIT License

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call and genotype Sv with population #111

Closed zhoudreames closed 1 year ago

zhoudreames commented 2 years ago

I want to call and genotype SV with population-level by using manta-svimmer-graphtype workflow, but I don't know how to gain the tutorial of the whole process, Can you provide me with tutorials and more details for it ？ thanks~

hannespetur commented 1 year ago

Hi, the github wiki page should be a good place to start

https://github.com/DecodeGenetics/graphtyper/wiki/User-guide#structural-variants-svs