Open rbr7 opened 3 years ago
Hello, yes only diploid genotyping model is available and we don't have any guidelines for genotyping somatic SVs. You could discover the somatic SVs with Manta and then call them using graphtyper but you'd need to find a way to determine the final genotyping from the read counts/support.
Best, Hannes
Hi,
i have a query wrt to the tool and its utility in genotyping cancer samples ?
what model does it assume in genotyping, is it diploid model ?
Can somatic SVs for tumor samples be used to genotype accurately using graphtyper ?
Thanks