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DecodeGenetics
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graphtyper
Population-scale genotyping using pangenome graphs
http://dx.doi.org/10.1038/ng.3964
MIT License
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SV end points for "OG" variants
#54
MaximilianStammnitz
closed
3 years ago
4
Error while loading some BAM indexes
#53
twesigomwedavid
closed
4 years ago
2
Including advanced options for graphtyper genotype_sv
#52
twesigomwedavid
opened
4 years ago
4
How to realign short reads to the graph pan-genome (constructed by GraphTyper construct) ?
#51
caixu0518
closed
3 years ago
2
Graphtyper appropriate for low-coverage data (1x) ?
#50
clairemerot
closed
3 years ago
1
Realignment stats
#49
twesigomwedavid
opened
4 years ago
1
[Feature] Option for writing CSI instead of TBI
#48
hannespetur
closed
3 years ago
1
LowQUAL for all homozygous reference sites
#47
jjfarrell
closed
3 years ago
6
Increasing sensitivity for variants with limited read support
#46
twesigomwedavid
closed
4 years ago
2
One region in Trio has very slow genotyping
#45
jjfarrell
closed
1 year ago
6
Some variants missed in the genotype_sv results
#44
biozzq
closed
3 years ago
1
Support for .csi indexed vcfs
#43
MaximilianStammnitz
closed
4 years ago
12
Call population SVs and Genotype
#42
biozzq
closed
4 years ago
11
Failure messages running genotype_sv on cram
#41
jjfarrell
closed
3 years ago
8
genotype_sv on insertions
#40
aakrosh
closed
4 years ago
2
genotype with >1 VCF input file
#39
martinghunt
closed
4 years ago
2
Version 2.5.1
#38
hannespetur
closed
4 years ago
0
genotype_sv
#37
wanpinglee
closed
4 years ago
3
v2.5 genotype segfault on toy data
#36
martinghunt
closed
4 years ago
5
genotype_sv crash with v2.4
#35
marqueda
closed
4 years ago
22
Version 2.5
#34
hannespetur
closed
4 years ago
0
Version 2.4
#33
hannespetur
closed
4 years ago
0
Version 2.3
#32
hannespetur
closed
4 years ago
0
make error "stdlib.h"
#31
asylvz
closed
4 years ago
6
Segmentation fault genotype_sv
#30
marqueda
closed
4 years ago
2
Version 2.2.1
#29
hannespetur
closed
4 years ago
1
Segmentation fault on a small SV example
#28
jmonlong
closed
4 years ago
5
Run full genotype pipeline with input vcf
#27
hannespetur
closed
4 years ago
5
Respect $TMPDIR environment variable
#26
hannespetur
closed
4 years ago
1
explanation of parameters in graphtyper genotype
#25
brentp
closed
4 years ago
16
Travis fix
#24
hannespetur
closed
4 years ago
0
Manta Inversion Split
#23
malmarri
closed
4 years ago
3
bioconda package
#22
TorHou
closed
4 years ago
3
SeqAn submodule update
#21
hannespetur
closed
5 years ago
0
Output error when sam/bam/cram index is missing
#20
hannespetur
closed
5 years ago
1
Update CMakeLists.txt
#19
Phhere
closed
4 years ago
2
Segmentation fault when running graphtyper call
#18
ivargr
closed
5 years ago
3
Version 2.0 (RC2)
#17
hannespetur
closed
5 years ago
0
support for haploid/different ploidy
#16
alexweisberg
opened
5 years ago
1
memory corruption error on vcf_merge
#15
alexweisberg
closed
5 years ago
2
cmake error
#14
yangxiaofeill
closed
5 years ago
1
construct error
#13
yangxiaofeill
closed
5 years ago
1
make error
#12
yangxiaofeill
closed
5 years ago
5
Make errors: No download step for 'project_xxx'
#11
vaofford
closed
6 years ago
2
Version 1.4
#10
hannespetur
closed
6 years ago
0
cmake cannot find pthread
#9
ekg
closed
6 years ago
13
[issue] b37 support. Possible fix for issue #7 .
#8
hannespetur
closed
6 years ago
0
[bug] 1, 2, 3, contig names not working
#7
hannespetur
closed
6 years ago
1
Feature: Read statistics
#6
hannespetur
closed
6 years ago
0
[Feature] add stat soft clipped per allele and mq per allele
#5
hannespetur
closed
7 years ago
0
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