Wrapped I/O streams and several code optimizations

DecodeGenetics / popvcf

Lossless VCF compression

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Closed hannespetur closed 2 years ago

hannespetur commented 2 years ago

Wrapped I/O streams in std::unique_ptr
- Several code optimizations. Considerable benefit is seen in "popvcf decode".
Added a benchmark with tabix indexing.
Fixed clang-tidy warnings

Replaces PR #1