Closed zhoudreames closed 1 year ago
i merge vcf by using svimmer, but the the format of DEL is strange, the REF is G while ALT is
#CHROM POS ID REF ALT QUAL FILTER INFO chr1 10649859 . G <DEL> 0 . END=10653389;SVTYPE=DEL
but I want to gained the normal format with DEL， for example：
#CHROM POS ID REF ALT QUAL FILTER INFO chr1 10649859 . GTGTCTCATGTCCGCGTCCCGTGTCTC..... G 0 . END=10653389;SVTYPE=DEL
the REF is GTGTCTCATGTCCGCGTCCCGTGTCTC..... while ALT is G,how to gain it,thanks~
i merge vcf by using svimmer, but the the format of DEL is strange, the REF is G while ALT is
but I want to gained the normal format with DEL， for example：
the REF is GTGTCTCATGTCCGCGTCCCGTGTCTC..... while ALT is G,how to gain it,thanks~