Closed qingpowuwu closed 9 months ago
It looks like you may have a local dedalus clone that you are hitting when you run the tests, as per the error message, in /home/dedalus
. You need to move out of this local repo to run the tests from the pip-installed module in your conda installation.
Hello,
I recently followed the instructions in the Dedalus documentation to upgrade from Dedalus v2 to v3. Here are the steps I took:
Installed Dedalus v2 from conda-forge:
conda install -c conda-forge dedalus c-compiler cython "h5py=*=mpi*"
Upgraded to Dedalus v3:
After activating the dedalus3 environment and running the test command (
python3 -m dedalus test
), I encountered several errors. The primary issue seems to be aModuleNotFoundError
related todedalus.core.transposes
. Here is a snippet of the error message:In total, there were 22 errors during the test collection, all seeming to stem from similar issues. I've attached the complete error log for your reference.
Could you please assist me in resolving these errors? Any guidance or suggestions would be greatly appreciated.
Thank you for your time and assistance.