Open isukrit opened 2 years ago
I still had issues with the HDF5 file generation. It is because the HCP data is huge and my workstation's RAM (which is pretty decent around ~128 GB) gives out before I can generate the output. I decided to go deep into things and further corrected by writing parts of the HDF5 in chunks. I have rewritten the code to handle this (also plugged a memory leak in the pool.map function) and you can consider the updated code for the users of FastSurfer.
Cheers, Sukrit generate_hdf5.zip
Hi team, I have been using FastSurfer for a while now and recently decided to use it to train on my own dataset. I have a couple of quick suggestions for the team when it comes to the _FastSurfer/FastSurferCNN/generatehdf5.py file:
I have attached the file for your reference, please.
Cheers, Sukrit
PS: Hoping to see the team at DZNE some time next summer! @m-reuter generate_hdf5.zip