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DeepChainBio / bio-transformers

bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
https://bio-transformers.readthedocs.io/en/latest/getting_started/install.html
Apache License 2.0
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Potential overlap #13

Closed sacdallago closed 3 years ago

sacdallago commented 3 years ago

Hi folks :)

looks like a great resource! Funny enough, to be on-topic: seems like an instance of convergent evolution :) https://github.com/sacdallago/bio_embeddings

I see that you are going in some interesting/different directions than what as done on the bio_embeddings side: we'd be happy to see if there are singergies & we can combine efforts rather than maybe distribute it on many different fronts. I also see from this blog post that you are already way ahead on the making the probability plots look beautiful, w.r.t. my ugly ones :D

In any case, let's chat if wanted!

CC @konstin

adsodemelk commented 3 years ago

Hi @sacdallago definitely there is an overlap in here. We were not aware of this! Looks great. We will be more than happy to have a chat. If you like the plots, you can create them for free at deepchain.bio, our platform for protein design. My email is n.lopezcarranza@instadeep.com. We can follow up on a call with our team. Best, Nicolas Lopez Carranza