braceal
commented
2 years ago Thank you for your question. At first glance, this error may come from the radical layer which could point to a configuration issue, rather than the application layer. @andre-merzky Do you have any thoughts on what could cause this error? Thanks!
If you can send us information on the system you are trying to run on, as well as a .tar.gz of the outputs (experiment directory as well as radical output files), the yaml configuration file, and the full stdout, it will help us debug the issue. @liyu886
Describe the question In the MolecularDynamics stage, the output is as follows.
Update: DeepDriveMD state: SCHEDULING Update: DeepDriveMD.MolecularDynamics state: SCHEDULING Update: DeepDriveMD.MolecularDynamics.task.0000 state: SCHEDULING Update: DeepDriveMD.MolecularDynamics.task.0000 state: SCHEDULED Update: DeepDriveMD.MolecularDynamics state: SCHEDULED ok submit:######################################################################## Update: DeepDriveMD.MolecularDynamics.task.0000 state: SUBMITTING closing session re.session.xxxxxxxxxxxxx.019314.0000 \ close pilot manager \ wait for 1 pilot(s) 0 ok ok session lifetime:31.9s ok close task manager ok wait for 1 pilot(s) 0 timeout All components terminated
In pmgr.log, there is an ERROR : [Callback]: pilot 'pilot.0000' failed (exit). But I don't know the reason that cause pilot failed. Please help me, thank you.