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DeepInfer / Slicer-DeepInfer

3D Slicer Module for connecting to model repository and use models for image analysis.
http://www.deepinfer.org/
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Module crash with sitk Error OutputLabel.nrrd does not exist #11

Open yh3ds opened 6 years ago

yh3ds commented 6 years ago

While tryting to run DeepInfer with CT Bone Segmenter under 3D Slicer 4.8.1 (build myself), I get the following error and the process stops : sitk::ERROR: The file "LocalPath.deepinfer.tmp\OutputLabel.nrrd" does not exist.

mlmms commented 5 years ago

I have downloaded the new Slicer 4.10.1 and, while running DeepInfer with 'Prostate Gland Segmenter', I get the following errors and the process stops: RuntimeError: Exception thrown in SimpleITK ReadImage: D:\D\S\Slicer-4101-build\SimpleITK\Code\IO\src\sitkImageReaderBase.cxx:89: sitk::ERROR: The file "C:\Users\CCIG.deepinfer.tmp\OutputLabel.nrrd" does not exist.

@mehrtash @gpernelle @kmader @mpslxz Thank you.

andreped commented 5 years ago

Same problem here using 3D Slicer 4.10.2 (Ubuntu 18.04). Running Slicer as sudo from the terminal did not fix the problem. The main problem lies here: [nrrd] nrrdSave: couldn't fopen("/home/deepinfer/data/OutputLabel.nrrd","wb"): Permission denied

Thus, the file cannot be created, and hence it doesn't exist later on.