As described in https://github.com/catalystneuro/neuroconv/issues/915, I would need to pass over a name value to PoseEstimation to support multiple DLC pose estimations in the same nwb file.
I am currently fixing it by piping an optional dictionary of additional kwargs from the args in this way:
def _write_pes_to_nwbfile(
nwbfile,
animal,
df_animal,
scorer,
video, # Expects this to be a tuple; first index is string path, second is the image shape as "0, width, 0, height"
paf_graph,
timestamps,
exclude_nans,
**optional_kwargs,
):
...
pe = PoseEstimation(
pose_estimation_series=pose_estimation_series,
description="2D keypoint coordinates estimated using DeepLabCut.",
original_videos=[video[0]],
# TODO check if this is a mandatory arg in ndx-pose (can skip if video is not found_
dimensions=[list(map(int, video[1].split(",")))[1::2]],
scorer=scorer,
source_software="DeepLabCut",
source_software_version=deeplabcut_version,
nodes=[pes.name for pes in pose_estimation_series],
edges=paf_graph if paf_graph else None,
**optional_kwargs,
)
If you would be open to support this fix, I can submit a new PR or add this solutions as well to #23, as you prefer!
As described in
https://github.com/catalystneuro/neuroconv/issues/915
, I would need to pass over aname
value toPoseEstimation
to support multiple DLC pose estimations in the samenwb
file.I am currently fixing it by piping an optional dictionary of additional kwargs from the args in this way:
If you would be open to support this fix, I can submit a new PR or add this solutions as well to #23, as you prefer!