pytables error in 2.2rc3

backyardbiomech commented 3 years ago

Describe the bug

To test out 2.2rc3, I followed the installation instructions to install a new environment on my DLC computer (env file downloaded from the blog), rather than the latest from the repo. I've encountered two errors:

the instructions to run pip install deeplabcut[gui] from within the env did not grab rc3 (got 2.1.10.4 instead). I had to run pip install deeplabcut[gui]==2.2rc3 Instructions should be clarified.
I was in the middle of a workflow, so I decided to jump right into evaluating a new network, but got a tables error, which I know was a bit of a problem during rc3 testing.

Desktop (please complete the following information about your system):

OS: Windows10
DeepLabCut Version 2.2rc3
conda version 4.10.1 (ran conda update conda just before installation of rc3)
Single animal, called in jupyter lab nb

To Reproduce Steps to reproduce the behavior, i.e.:

create env with DEEPLABCUT.yaml
activate env, and run pip install deeplabcut[gui]==2.2rc3
confirm version with deeplabcut.__version__
ran dlc.evaluate_network(config, plotting=True, gputouse=0, show_errors=True, Shuffles=[1])
See error:

TRACEBACK

```python ----> 5 dlc.evaluate_network(config, plotting=True, gputouse=0, show_errors=True, Shuffles=[1]) ~\Miniconda3\envs\dlc22rc3\lib\site-packages\deeplabcut\pose_estimation_tensorflow\core\evaluate.py in evaluate_network(config, Shuffles, trainingsetindex, plotting, show_errors, comparisonbodyparts, gputouse, rescale, modelprefix, c_engine) 613 # Loading human annotatated data 614 trainingsetfolder = auxiliaryfunctions.GetTrainingSetFolder(cfg) --> 615 Data = pd.read_hdf( 616 os.path.join( 617 cfg["project_path"], ~\Miniconda3\envs\dlc22rc3\lib\site-packages\pandas\io\pytables.py in read_hdf(path_or_buf, key, mode, errors, where, start, stop, columns, iterator, chunksize, **kwargs) 397 raise FileNotFoundError(f"File {path_or_buf} does not exist") 398 --> 399 store = HDFStore(path_or_buf, mode=mode, errors=errors, **kwargs) 400 # can't auto open/close if we are using an iterator 401 # so delegate to the iterator ~\Miniconda3\envs\dlc22rc3\lib\site-packages\pandas\io\pytables.py in __init__(self, path, mode, complevel, complib, fletcher32, **kwargs) 540 raise ValueError("format is not a defined argument for HDFStore") 541 --> 542 tables = import_optional_dependency("tables") 543 544 if complib is not None and complib not in tables.filters.all_complibs: ~\Miniconda3\envs\dlc22rc3\lib\site-packages\pandas\compat\_optional.py in import_optional_dependency(name, extra, raise_on_missing, on_version) 107 except ImportError: 108 if raise_on_missing: --> 109 raise ImportError(msg) from None 110 else: 111 return None ImportError: Missing optional dependency 'tables'. Use pip or conda to install tables. ```

conda list shows pytables==3.6.1 from conda-forge

full conda list

``` (dlc22rc3) C:\>conda list # packages in environment at C:\Users\jacksonbe3\Miniconda3\envs\dlc22rc3: # # Name Version Build Channel absl-py 0.13.0 pypi_0 pypi argon2-cffi 20.1.0 py38h294d835_2 conda-forge astunparse 1.6.3 pypi_0 pypi async_generator 1.10 py_0 conda-forge attrs 21.2.0 pyhd8ed1ab_0 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 py_2 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge bayesian-optimization 1.2.0 pypi_0 pypi bleach 3.3.0 pyh44b312d_0 conda-forge blosc 1.21.0 h0e60522_0 conda-forge bzip2 1.0.8 h8ffe710_4 conda-forge ca-certificates 2021.5.30 h5b45459_0 conda-forge cachetools 4.2.2 pypi_0 pypi certifi 2021.5.30 py38haa244fe_0 conda-forge cffi 1.14.5 py38hd8c33c5_0 conda-forge chardet 4.0.0 pypi_0 pypi click 8.0.1 pypi_0 pypi colorama 0.4.4 pyh9f0ad1d_0 conda-forge cycler 0.10.0 pypi_0 pypi cython 0.29.23 pypi_0 pypi debugpy 1.3.0 py38h885f38d_0 conda-forge decorator 4.4.2 pypi_0 pypi deeplabcut 2.2rc3 pypi_0 pypi defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge entrypoints 0.3 pyhd8ed1ab_1003 conda-forge ffmpeg 4.3.1 ha925a31_0 conda-forge filterpy 1.4.5 pypi_0 pypi flatbuffers 1.12 pypi_0 pypi gast 0.4.0 pypi_0 pypi google-auth 1.32.1 pypi_0 pypi google-auth-oauthlib 0.4.4 pypi_0 pypi google-pasta 0.2.0 pypi_0 pypi grpcio 1.34.1 pypi_0 pypi h5py 3.1.0 pypi_0 pypi hdf5 1.10.6 nompi_h5268f04_1114 conda-forge icu 68.1 h0e60522_0 conda-forge idna 2.10 pypi_0 pypi imageio 2.9.0 pypi_0 pypi imageio-ffmpeg 0.4.4 pypi_0 pypi imgaug 0.4.0 pypi_0 pypi importlib-metadata 4.6.0 py38haa244fe_0 conda-forge intel-openmp 2021.3.0 pypi_0 pypi ipykernel 6.0.0 py38h43734a8_0 conda-forge ipython 7.25.0 py38h43734a8_1 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.6.3 pyhd3deb0d_0 conda-forge jedi 0.18.0 py38haa244fe_2 conda-forge jinja2 3.0.1 pyhd8ed1ab_0 conda-forge joblib 1.0.1 pypi_0 pypi jpeg 9d h8ffe710_0 conda-forge jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge jupyter 1.0.0 py38haa244fe_6 conda-forge jupyter_client 6.1.12 pyhd8ed1ab_0 conda-forge jupyter_console 6.4.0 pyhd8ed1ab_0 conda-forge jupyter_core 4.7.1 py38haa244fe_0 conda-forge jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge jupyterlab_widgets 1.0.0 pyhd8ed1ab_1 conda-forge keras-nightly 2.5.0.dev2021032900 pypi_0 pypi keras-preprocessing 1.1.2 pypi_0 pypi kiwisolver 1.3.1 pypi_0 pypi krb5 1.19.1 hbae68bd_0 conda-forge libblas 3.9.0 9_mkl conda-forge libcblas 3.9.0 9_mkl conda-forge libclang 11.1.0 default_h5c34c98_1 conda-forge libcurl 7.77.0 h789b8ee_0 conda-forge liblapack 3.9.0 9_mkl conda-forge libpng 1.6.37 h1d00b33_2 conda-forge libsodium 1.0.18 h8d14728_1 conda-forge libssh2 1.9.0 h680486a_6 conda-forge llvmlite 0.34.0 pypi_0 pypi markdown 3.3.4 pypi_0 pypi markupsafe 2.0.1 py38h294d835_0 conda-forge matplotlib 3.1.3 pypi_0 pypi matplotlib-inline 0.1.2 pyhd8ed1ab_2 conda-forge mistune 0.8.4 py38h294d835_1004 conda-forge mkl 2021.2.0 hb70f87d_389 conda-forge mock 4.0.3 py38haa244fe_1 conda-forge moviepy 1.0.1 pypi_0 pypi msgpack 1.0.2 pypi_0 pypi msgpack-numpy 0.4.7.1 pypi_0 pypi nb_conda 2.2.1 py38haa244fe_4 conda-forge nb_conda_kernels 2.3.1 py38haa244fe_0 conda-forge nbclient 0.5.3 pyhd8ed1ab_0 conda-forge nbconvert 6.1.0 py38haa244fe_0 conda-forge nbformat 5.1.3 pyhd8ed1ab_0 conda-forge nest-asyncio 1.5.1 pyhd8ed1ab_0 conda-forge networkx 2.5.1 pypi_0 pypi notebook 6.4.0 pyha770c72_0 conda-forge numba 0.51.1 pypi_0 pypi numexpr 2.7.3 py38h4c96930_0 conda-forge numpy 1.19.5 pypi_0 pypi oauthlib 3.1.1 pypi_0 pypi opencv-python 4.5.2.54 pypi_0 pypi opencv-python-headless 3.4.9.33 pypi_0 pypi openssl 1.1.1k h8ffe710_0 conda-forge opt-einsum 3.3.0 pypi_0 pypi packaging 20.9 pyh44b312d_0 conda-forge pandas 1.2.5 pypi_0 pypi pandoc 2.14.0.3 h8ffe710_0 conda-forge pandocfilters 1.4.2 py_1 conda-forge parso 0.8.2 pyhd8ed1ab_0 conda-forge patsy 0.5.1 pypi_0 pypi pickleshare 0.7.5 py_1003 conda-forge pillow 8.3.0 pypi_0 pypi pip 21.1.3 pyhd8ed1ab_0 conda-forge proglog 0.1.9 pypi_0 pypi prometheus_client 0.11.0 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.19 pyha770c72_0 conda-forge prompt_toolkit 3.0.19 hd8ed1ab_0 conda-forge protobuf 3.17.3 pypi_0 pypi psutil 5.8.0 pypi_0 pypi pyasn1 0.4.8 pypi_0 pypi pyasn1-modules 0.2.8 pypi_0 pypi pycparser 2.20 pyh9f0ad1d_2 conda-forge pygments 2.9.0 pyhd8ed1ab_0 conda-forge pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge pyqt 5.12.3 py38haa244fe_7 conda-forge pyqt-impl 5.12.3 py38h885f38d_7 conda-forge pyqt5-sip 4.19.18 py38h885f38d_7 conda-forge pyqtchart 5.12 py38h885f38d_7 conda-forge pyqtwebengine 5.12.1 py38h885f38d_7 conda-forge pyrsistent 0.17.3 py38h294d835_2 conda-forge pytables 3.6.1 py38h153c448_3 conda-forge python 3.8.10 h7840368_1_cpython conda-forge python-dateutil 2.8.1 py_0 conda-forge python_abi 3.8 2_cp38 conda-forge pytz 2021.1 pypi_0 pypi pywavelets 1.1.1 pypi_0 pypi pywin32 300 py38h294d835_0 conda-forge pywinpty 1.1.3 py38hd3f51b4_0 conda-forge pyyaml 5.4.1 pypi_0 pypi pyzmq 22.1.0 py38h09162b1_0 conda-forge qt 5.12.9 h5909a2a_4 conda-forge qtconsole 5.1.1 pyhd8ed1ab_0 conda-forge qtpy 1.9.0 py_0 conda-forge requests 2.25.1 pypi_0 pypi requests-oauthlib 1.3.0 pypi_0 pypi rsa 4.7.2 pypi_0 pypi ruamel-yaml 0.17.10 pypi_0 pypi ruamel-yaml-clib 0.2.4 pypi_0 pypi scikit-image 0.18.2 pypi_0 pypi scikit-learn 0.24.2 pypi_0 pypi scipy 1.7.0 pypi_0 pypi send2trash 1.7.1 pyhd8ed1ab_0 conda-forge setuptools 49.6.0 py38haa244fe_3 conda-forge shapely 1.7.1 pypi_0 pypi six 1.15.0 pypi_0 pypi sqlite 3.36.0 h8ffe710_0 conda-forge statsmodels 0.12.2 pypi_0 pypi tabulate 0.8.9 pypi_0 pypi tbb 2021.2.0 h2d74725_1 conda-forge tensorboard 2.5.0 pypi_0 pypi tensorboard-data-server 0.6.1 pypi_0 pypi tensorboard-plugin-wit 1.8.0 pypi_0 pypi tensorflow 2.5.0 pypi_0 pypi tensorflow-estimator 2.5.0 pypi_0 pypi tensorpack 0.9.8 pypi_0 pypi termcolor 1.1.0 pypi_0 pypi terminado 0.10.1 py38haa244fe_0 conda-forge testpath 0.5.0 pyhd8ed1ab_0 conda-forge tf-slim 1.1.0 pypi_0 pypi threadpoolctl 2.1.0 pypi_0 pypi tifffile 2021.6.14 pypi_0 pypi tk 8.6.10 h8ffe710_1 conda-forge tornado 6.1 py38h294d835_1 conda-forge tqdm 4.61.1 pypi_0 pypi traitlets 5.0.5 py_0 conda-forge typing-extensions 3.7.4.3 pypi_0 pypi ucrt 10.0.20348.0 h57928b3_0 conda-forge urllib3 1.26.6 pypi_0 pypi vc 14.2 hb210afc_5 conda-forge vs2015_runtime 14.29.30037 h902a5da_5 conda-forge wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge webencodings 0.5.1 py_1 conda-forge werkzeug 2.0.1 pypi_0 pypi wheel 0.36.2 pyhd3deb0d_0 conda-forge widgetsnbextension 3.5.1 py38haa244fe_4 conda-forge wincertstore 0.2 py38haa244fe_1006 conda-forge winpty 0.4.3 4 conda-forge wrapt 1.12.1 pypi_0 pypi wxpython 4.0.7.post2 pypi_0 pypi zeromq 4.3.4 h0e60522_0 conda-forge zipp 3.4.1 pyhd8ed1ab_0 conda-forge zlib 1.2.11 h62dcd97_1010 conda-forge ```

attempted fix

conda uninstall pytables which led to a lot of changes (mostly superseding) of various modules
pip install tables
The code seemed to work (but my GPU was not being engaged, so now I'm off to try to fix that...)

MMathisLab commented 3 years ago

strange! indeed we had some funniness with 3.9, but tables is in the pip setup (https://github.com/DeepLabCut/DeepLabCut/blob/f75daf5464571f46285de0523517afb7e17025f7/setup.py#L18), so not sure why it broke/did not install (sorry!) we will see what we can do.

for 3, I needed to upgrade my. cuDNN, conda install -c conda-forge cudnn then my GPU was happy with me again, hope thats the easy fix

MMathisLab commented 3 years ago

also @backyardbiomech good catch on blog, it's updated, and for ease, I just pinned the 2.2rc3 in the file now *and dropped pytables, if you want to try this again! http:\blog.deeplabcut.org

backyardbiomech commented 3 years ago

On my mac, tables installs with pip.

I'll check on the windows computer again, but it just decided to force a windows update so now I'm left waiting (remotely) for it to (hopefully) restart.

MMathisLab commented 3 years ago

thanks so much 👯

backyardbiomech commented 3 years ago

The blog's version of DEEPLABCUT.yaml worked on windows, mostly. Windows pip does not like the single quotes in 'deeplabcut[gui]'==2.2rc3. When running in pip, it produces a somewhat helpful error, but when using the DEEPLABCUT.yaml file, it produces a scary looking anaconda error that's not very helpful. Simply removing the single quotes from that line works.

neuropil commented 3 years ago

@backyardbiomech What was the anaconda error?

backyardbiomech commented 3 years ago

I can't remember the anaconda error, but there was some hint buried deep in there that it was a problem with pip or the deeplabcut installation.

backyardbiomech commented 3 years ago

I just reproduced the error.

``` conda env create -n rc3test -f DEEPLABCUT.yaml # >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda\exceptions.py", line 1079, in __call__ return func(*args, **kwargs) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\cli\main.py", line 80, in do_call exit_code = getattr(module, func_name)(args, parser) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\cli\main_create.py", line 88, in execute spec = specs.detect(name=name, filename=get_filename(args.file), directory=os.getcwd()) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\specs\__init__.py", line 43, in detect if spec.can_handle(): File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\specs\yaml_file.py", line 18, in can_handle self._environment = env.from_file(self.filename) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\env.py", line 166, in from_file return from_yaml(yamlstr, filename=filename) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda_env\env.py", line 143, in from_yaml data = yaml_safe_load(yamlstr) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\conda\common\serialize.py", line 67, in yaml_safe_load return yaml.safe_load(string, version="1.2") File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\main.py", line 980, in safe_load return load(stream, SafeLoader, version) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\main.py", line 935, in load return loader._constructor.get_single_data() File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\constructor.py", line 109, in get_single_data node = self.composer.get_single_node() File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 78, in get_single_node document = self.compose_document() File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 101, in compose_document node = self.compose_node(None, None) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 138, in compose_node node = self.compose_mapping_node(anchor) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 218, in compose_mapping_node item_value = self.compose_node(node, item_key) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 136, in compose_node node = self.compose_sequence_node(anchor) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 180, in compose_sequence_node node.value.append(self.compose_node(node, index)) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 138, in compose_node node = self.compose_mapping_node(anchor) File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\composer.py", line 211, in compose_mapping_node while not self.parser.check_event(MappingEndEvent): File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\parser.py", line 141, in check_event self.current_event = self.state() File "C:\Users\jacksonbe3\Miniconda3\lib\site-packages\ruamel_yaml\parser.py", line 581, in parse_block_mapping_key token.start_mark, ruamel_yaml.parser.ParserError: while parsing a block mapping in "", line 26, column 5: - pip: ^ (line: 26) expected , but found '' in "", line 27, column 24: - 'deeplabcut[gui]'==2.2rc3 ^ (line: 27) `$ C:\Users\jacksonbe3\Miniconda3\Scripts\conda-env-script.py create -n rc3test -f DEEPLABCUT.yaml` environment variables: CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_DEFAULT_ENV=base CONDA_EXE=C:\Users\jacksonbe3\Miniconda3\condabin\..\Scripts\conda.exe CONDA_EXES="C:\Users\jacksonbe3\Miniconda3\condabin\..\Scripts\conda.exe" CONDA_PREFIX=C:\Users\jacksonbe3\Miniconda3 CONDA_PROMPT_MODIFIER=(base) CONDA_PYTHON_EXE=C:\Users\jacksonbe3\Miniconda3\python.exe CONDA_ROOT=C:\Users\jacksonbe3\Miniconda3 CONDA_SHLVL=1 CUDA_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v11.4 CURL_CA_BUNDLE= HOMEPATH=\ NVTOOLSEXT_PATH=C:\Program Files\NVIDIA Corporation\NvToolsExt\ PATH=C:\Users\jacksonbe3\Miniconda3;C:\Users\jacksonbe3\Miniconda3\Library\ mingw-w64\bin;C:\Users\jacksonbe3\Miniconda3\Library\usr\bin;C:\Users\ jacksonbe3\Miniconda3\Library\bin;C:\Users\jacksonbe3\Miniconda3\Scrip ts;C:\Users\jacksonbe3\Miniconda3\bin;C:\Users\jacksonbe3\Miniconda3;C :\Users\jacksonbe3\Miniconda3\Library\mingw-w64\bin;C:\Users\jacksonbe 3\Miniconda3\Library\usr\bin;C:\Users\jacksonbe3\Miniconda3\Library\bi n;C:\Users\jacksonbe3\Miniconda3\Scripts;C:\Users\jacksonbe3\Miniconda 3\bin;C:\Users\jacksonbe3\Miniconda3\condabin;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v11.4\bin;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v11.4\libnvvp;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v10.0\bin;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v10.0\libnvvp;C:\oracle\product\12.1.0\client_1\bin;C:\wi ndows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32 \WindowsPowerShell\v1.0;C:\windows\System32\OpenSSH;C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\ffmpeg\bin;C:\Program Files\NVIDIA Corporation\Nsight Compute 20 21.2.0;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WIND OWS\System32\WindowsPowerShell\v1.0;C:\WINDOWS\System32\OpenSSH;C:\Use rs\jacksonbe3\AppData\Local\Microsoft\WindowsApps;C:\Users\jacksonbe3\ AppData\Local\Programs\Git\cmd;C:\Users\jacksonbe3\AppData\Local\GitHu bDesktop\bin;C:\Users\jacksonbe3\AppData\Local\Microsoft\WindowsApps;. PSMODULEPATH=C:\Program Files\WindowsPowerShell\Modules;C:\WINDOWS\system32\Windows PowerShell\v1.0\Modules PYTHONPATH=C:\Users\jacksonbe3\Documents\repos REQUESTS_CA_BUNDLE= SSL_CERT_FILE= active environment : base active env location : C:\Users\jacksonbe3\Miniconda3 shell level : 1 user config file : C:\Users\jacksonbe3\.condarc populated config files : conda version : 4.10.3 conda-build version : not installed python version : 3.7.7.final.0 virtual packages : __cuda=11.4=0 __win=0=0 __archspec=1=x86_64 base environment : C:\Users\jacksonbe3\Miniconda3 (writable) conda av data dir : C:\Users\jacksonbe3\Miniconda3\etc\conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch package cache : C:\Users\jacksonbe3\Miniconda3\pkgs C:\Users\jacksonbe3\.conda\pkgs C:\Users\jacksonbe3\AppData\Local\conda\conda\pkgs envs directories : C:\Users\jacksonbe3\Miniconda3\envs C:\Users\jacksonbe3\.conda\envs C:\Users\jacksonbe3\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/4.10.3 requests/2.25.1 CPython/3.7.7 Windows/10 Windows/10.0.19041 administrator : False netrc file : None offline mode : False An unexpected error has occurred. Conda has prepared the above report. If submitted, this report will be used by core maintainers to improve future releases of conda. Would you like conda to send this report to the core maintainers? [y/N]: ```

The key line it is:

      in "<unicode string>", line 27, column 24:
            - 'deeplabcut[gui]'==2.2rc3
                               ^ (line: 27)

If you see that, then open DEEPLABCUT.yaml in a text editor, remove the single quotes around deeplabbut[gui], save, and run the env create command again.

MMathisLab commented 3 years ago

@jeylau seems quotes are required for ubuntu, not for windows - maybe we need a work around?

MMathisLab commented 3 years ago

@backyardbiomech is you do this, can this install on windows? "deeplabcut[gui]"

backyardbiomech commented 3 years ago

on the anaconda command line in windows 10

pip install "deeplabcut[gui]" installs 2.1.10.4 pip install 'deeplabcut[gui]' installs 2.1.10.4 pip install 'deeplabcut[gui]'==2.2rc3 produces ERROR: Invalid requirement: "'deeplabcut[gui]'==2.2rc3" pip install "deeplabcut[gui]"==2.2rc3 installs 2.2rc3 pip install "deeplabcut[gui]==2.2rc3" installs 2.2rc3 pip install 'deeplabcut[gui]==2.2rc3' produces ERROR: Invalid requirement:...

in the DEEPLABCUT.yaml env file when creating a new env

pip install "deeplabcut[gui]"==2.2rc3 produces an error pip install "deeplabcut[gui]==2.2rc3" installs 2.2rc3

pip install "deeplabcut[gui]==2.2rc3" also works on my mac.

It looks like surround the full package==version in double quotes is the only universal instruction across my platforms and installation pathways.

DeepLabCut / DeepLabCut