Open paraynaud opened 1 week ago
As far as I know we used a machine with 64GB of RAM and a consumer graphics card with around 8 GB of VRAM, but I am not sure. @FraukeWilm Can you comment on this?
I am also not sure why truncation of the dataset would be necessary.
BTW: I opened the discussions tab.
wrt the versions:
Hello, here is a small update on what I've been able to reproduce and the issues I faced so far. Disclaimer: I opened an issue because I didn't find the "Discussion" part of the repository.
Accomplishments
I am able to execute all four scripts:
training.py, inference.py, evaluation.py, aggregate.py
. To do so, I needed to make some adjustments in the scripts, see #11, and I had to truncate a bit the database during the training.Issues
to my scripts (after downloading the binaries of Openslide).
pip install -r requirements.txt
didn't work for me. I installed the libraries one by one, but I got errors with the versions informed in the currentrequirements.txt
. Some comments that could be useful for future installations:pandas
limits the version of python to3.8
torchvision
limits thetorch
version used (the versions used are not up-to-date)torch==1.8.1
andtorchvision==0.9.1
(GPU versions). The installation of Torch previous versions are available here https://pytorch.org/get-started/previous-versions/, and I used:pip install torch==1.8.1+cu111 torchvision==0.9.1+cu111 torchaudio==0.8.1 -f https://download.pytorch.org/whl/torch_stable.html
torch.cuda.is_available()==True
wandb==0.18.3
:wandb
withwandb.login(key="your-40-characters-keys")
at the beginning of the training, because I got issues with the terminal connectionnumpy
version used, pip will likely try to install newer versions.Questions
Can I ask the specifications of the hardware you used to obtain your results ? In my case: Windows 11, 16GB of RAM with an Nvidia RTX4090 Laptop ; I had to truncate the database I used for making training run properly, i.e.
train_files[0:--]; valid_files[0:-]
. Otherwise, I got the error:Did you encounter this one ?
In any case, fell free to let me know if I made some kind of mistakes, or any advice !