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DeepMicroscopy / SlideRunner

SlideRunner is a tool for massive cell annotations in whole slide images
GNU General Public License v3.0
75 stars 10 forks source link

Download for MacOS is not a zipfile #25

Closed DanRuderman closed 4 years ago

DanRuderman commented 5 years ago

Just downloaded the MacOS release zip file. Zip didn't recognize its contents, which are:

version https://git-lfs.github.com/spec/v1 oid sha256:b16d5c0613a2e4b8ba1393045b09530cbb0c99632125721b8e8deba7a0348609 size 281423076

Creating from scratch by downloading the repository and running python setup.py install gives a similar result.

Thank you.

maubreville commented 5 years ago

Dear Dan,

I am sorry to hear. Last time I checked it was working.

A friend also got an error related to a non decimal version of some of the required packages. I am currently on vacation with only my iPhone with me. I tried to resolve the issue in 6aa3546. Could you try to clone again / pull and see if it works?

Best Marv

DanRuderman commented 5 years ago

Thanks, Marc. I downloaded anew and ran python setup.py install. In the resulting dist/ directory I see:

-rw-r--r--@ 1 ruderman staff 86M Sep 8 22:18 SlideRunner.exe -rw-r--r--@ 1 ruderman staff 134B Sep 8 22:18 SlideRunner.app.zip -rw-r--r-- 1 ruderman staff 426K Sep 9 06:48 SlideRunner-1.26.0-py3.6.egg

So it only updated the egg file ("Sep 9"). I successfully ran easy_install on the egg file, but I'm not clear on how to execute SlideRunner now that it's installed. Understand you're on vacation, so no need to respond right away. Many thanks.

maubreville commented 5 years ago

Dear Dan,

after a 'python setup.py develop' you should have the script sliderunner in your path. If not, you can try to run main.py within the SlideRunner folder.

I'll be back from vacation in a week and will or an updated version of the Mac app bundle on the site then.

Best regards Marc

DanRuderman commented 5 years ago

Thank you!

maubreville commented 5 years ago

Dear Dan,

I tried to compile the current version with pyinstaller for Mac OS now for some hours, yet without success. Do you think it's possible to give it another shot with the source code? I'm back from holiday now and should things not work out, we could also try to have a skype call and fix it together.

Best regards,

Marc

DanRuderman commented 5 years ago

Thanks, Marc. I was able to get it to run using 'python setup.py develop' and then running the script sliderunner.

maubreville commented 5 years ago

That's great. I hope it is useful for your purpose.

maubreville commented 4 years ago

The latest version is uploaded and should be fine.