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DeepPhe / DeepPhe-Release

Public release of the DeepPhe analytic software
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PatientX Gold annotations are incorrect. #3

Closed seanfinan closed 6 years ago

seanfinan commented 6 years ago

Gold annotations in data/sample/eval/ do not use the correct ontology class names. Evaluation of patientX produces:

Label TP TP' FP FN TN Precis Recall Accur F1-Score Cancer 0.0000 0 2 1 0 0.0000 0.0000 0.0000 -

Label TP TP' FP FN TN Precis Recall Accur F1-Score Tumor 0.0000 0 4 2 0 0.0000 0.0000 0.0000 -

As the distributed test set the eval should produce something above 0.0000 Manual evaluation shows that the score should be better.

jamesmasanz commented 6 years ago

updated gold files will be checked in Monday 10/29