DeepRank 3D-Vac issues - Githubissues

DeepRank / 3D-Vac

Personalized cancer vaccine design through 3D modelling boosted geometric learning.

Apache License 2.0

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I don't find how to get allele_split.pkl

#192 laura1005829 closed 2 months ago
1
Add cv csvs paper

#191 DarioMarzella opened 2 months ago
0
edit clustered configuration details for csvs

#190 gcroci2 closed 3 months ago
0
Move ipynb for saving deeprank2 outputs CSVs into inherent folder

#189 gcroci2 closed 3 months ago
0
add allele clustered path for multiple runs

#188 gcroci2 closed 3 months ago
0
Set early stopping and best model selection

#187 gcroci2 closed 3 months ago
0
add cuda seed, fix pandas grouping, set epoch

#186 gcroci2 closed 3 months ago
0
Add script for multiple runs and align the training with the new version of deeprank2

#185 gcroci2 closed 3 months ago
0
Delete craft_text.md

#184 gcroci2 closed 5 months ago
0
Update README.md

#183 gcroci2 closed 7 months ago
0
remove tools folder

#182 gcroci2 closed 7 months ago
0
align files with main

#181 gcroci2 closed 7 months ago
0
start cleaning exploration folder

#180 gcroci2 closed 7 months ago
0
clean readme and add ssl

#179 gcroci2 closed 7 months ago
0
clean train folder

#178 gcroci2 closed 7 months ago
0
cleanup for db4

#177 gcroci2 closed 7 months ago
0
clean db3 step

#176 gcroci2 closed 7 months ago
0
clean db2 step

#175 gcroci2 closed 7 months ago
0
clean db1 step

#174 gcroci2 closed 7 months ago
0
improve readme intro

#173 gcroci2 closed 7 months ago
0
Update figures branch to main

#172 DarioMarzella closed 8 months ago
0
Figures pop paper

#171 DarioMarzella closed 8 months ago
0
Fix encoding size issue

#170 DarioMarzella closed 10 months ago
0
Add hydrogens to the PDB files and rerun the pipeline

#169 gcroci2 closed 8 months ago
0
Reorder seq training scripts

#168 DarioMarzella closed 10 months ago
0
Reorganize DeepRank and sequence-based training scripts

#167 DarioMarzella closed 10 months ago
0
Cnn experiments dario

#166 DarioMarzella closed 10 months ago
0
Compare with main on mlp scripts

#165 DarioMarzella closed 10 months ago
0
Change indentations from tabs to four spaces

#164 DarioMarzella closed 2 months ago
2
3D-vac pipeline

#163 gcroci2 opened 11 months ago
2
Reorganize code structure

#162 DarioMarzella closed 1 year ago
0
Cnn experiments dario

#161 DarioMarzella closed 1 year ago
0
fix_db3_mhcii

#160 DarioMarzella closed 1 year ago
0
Deeprank to deeprank core

#159 DarioMarzella closed 1 year ago
0
Production mhci

#158 DarioMarzella closed 1 year ago
0
Merge branch 'main' of github.com:DeepRank/3D-Vac

#157 DarioMarzella closed 1 year ago
0
Cnn experiments dario

#156 DarioMarzella closed 1 year ago
0
Finalize structure of the repo

#155 gcroci2 opened 1 year ago
0
add missing script for generating ids

#154 heleensev closed 1 year ago
0
Cnn experiments dario

#153 DarioMarzella closed 1 year ago
0
Train CNNs using deeprankcore

#152 gcroci2 closed 1 year ago
1
Finalize GNNs for the scientific paper

#151 gcroci2 closed 7 months ago
0
Make decision about `pssm` feature

#150 gcroci2 closed 11 months ago
0
Rerun pipeline for grids and improve folders' structure

#149 gcroci2 closed 1 year ago
0
Updare cnn_experiments_dario to main

#148 DarioMarzella closed 1 year ago
0
Use multiple PANDORA models in the dataset

#147 gcroci2 closed 2 months ago
2
Create clusters for training and validation as well as for testing set

#146 gcroci2 closed 2 months ago
1
Try out LayerNorm instead of BatchNorm

#145 gcroci2 closed 11 months ago
0
Mlp with diff input size

#144 DanLep97 closed 1 year ago
1
Db3 updates

#143 heleensev closed 1 year ago
0