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DeepRank
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DeepRank-Mut
Deep learning framework to predict functional effects of missense variants in human
Apache License 2.0
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testing DeepRank-Mut
#33
imerelli
opened
11 months ago
54
Update README.md for archiving the repository
#32
gcroci2
closed
10 months ago
2
Fix atomic contacts 1
#31
rgayatri
closed
1 year ago
0
add softmax to the final output
#30
rgayatri
opened
2 years ago
1
Adds new features, based on amino acid swaps
#29
cbaakman
opened
2 years ago
1
Add a 3rd output class, labeled UNKNOWN.
#28
cbaakman
opened
2 years ago
1
Adds a b_factor feature
#27
cbaakman
closed
2 years ago
1
Add secondary structure features from dssp files.
#26
cbaakman
closed
2 years ago
1
adds the gnomAD module to the preprocessing
#25
cbaakman
closed
2 years ago
1
Add dbNSFP option
#24
cbaakman
closed
2 years ago
1
A fix for ROC output
#23
cbaakman
closed
2 years ago
1
Add DNA atoms to forcefield if possible
#22
rgayatri
opened
2 years ago
0
Mprof chunks
#21
rgayatri
closed
2 years ago
1
Conservation features with augmented grid fix
#20
cbaakman
closed
2 years ago
3
A fix for abnormal augmented grid features
#19
cbaakman
closed
2 years ago
1
makes an mcc plot
#18
cbaakman
closed
2 years ago
1
Links the variants to epoch data
#17
cbaakman
closed
2 years ago
1
how to handle missing values
#16
cbaakman
opened
2 years ago
1
Prevent atom alternative locations from ending up in the dataset
#15
cbaakman
closed
3 years ago
4
NaN mapped to the feature grid
#14
cbaakman
closed
2 years ago
3
Makes the error messages better usable for bug tracking
#13
cbaakman
closed
3 years ago
1
Non X-ray structures slowdown the preprocessing step
#11
rgayatri
closed
3 years ago
1
RuntimeWarning in preprocessing step
#10
rgayatri
opened
3 years ago
1
Adaptation to use X-ray structures only
#9
cbaakman
closed
3 years ago
0
fix for atoms that are not in the forcefield
#8
cbaakman
closed
3 years ago
0
Increase efficiency by adding torch implementation
#7
cbaakman
closed
3 years ago
1
top 20 checks
#6
rgayatri
closed
3 years ago
3
Smaller datasets
#5
cbaakman
closed
3 years ago
1
Adapt to the new table format
#4
cbaakman
closed
3 years ago
1
Preprocess conservation data from the latest bioprodict dataset format
#3
cbaakman
closed
3 years ago
1
Merge master-efro to main
#2
rgayatri
closed
3 years ago
0
add distibuted data parallelism to training
#1
ragna-van-horck
closed
3 years ago
1