DeepRank / deeprank

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Redo Figure 2 #162

Open NicoRenaud opened 4 years ago

NicoRenaud commented 4 years ago

We need a better representation of the crystal and the two types of interface for figure 2. Maybe a schematic of crystal versus biological would be good since we targeting a broad audience journal. We can also add the protein of both interface. We also need the results as confusion matrix/bar plots etc ...

LilySnow commented 4 years ago

For Fig. 2D Bar chart:

  1. Could we use something suggested by Sonja (i.e., no axis and only numbers on top of the bars): https://towardsdatascience.com/anything-but-bars-the-10-best-alternatives-to-bar-graphs-fecb2aaee53a

  2. Could we use a heavier color? It seems too light now.

LilySnow commented 4 years ago

Fig. 2B, can we use this plot and modify Fig. 2A accordingly? (pymol pse file for this figure: https://www.dropbox.com/s/glcj2eok0wafd73/Fig2.pse?dl=0)

image

LilySnow commented 4 years ago

Fig. 2D, can we remove redundant color and do something like this: image

LilySnow commented 4 years ago

Hi Cunliang,

How about something like this (in Dropbox: deeprank_paper/Fig2_xue/Presentation1.pptx:

image