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DeepRank / deeprank2

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
https://deeprank2.readthedocs.io/en/latest/?badge=latest
Apache License 2.0
32 stars 12 forks source link

Provide the trained models for various scenarios. #602

Open amjjbonvin opened 5 months ago

amjjbonvin commented 5 months ago

Is your feature request related to a problem? Please describe.

In the previous DeepRank repo we were providing the pre-trained models. These are missing here. It would improve the usability of the code.

gcroci2 commented 5 months ago

Is your feature request related to a problem? Please describe.

In the previous DeepRank repo we were providing the pre-trained models. These are missing here. It would improve the usability of the code.

Do you mean this folder? If yes, for providing the same pre-trained models we should re-train them, in order to save them again in a format which is compatible with DeepRank2 API.

amjjbonvin commented 5 months ago

Yes - and also the models of DeepRank-GNN. Those models are needed is users want to use it for scoring their own models as we describe in the original papers.

github-actions[bot] commented 4 months ago

This issue is stale because it has been open for 30 days with no activity.

gcroci2 commented 2 months ago

We are reviewing and cleaning the open issues on deeprank2, this one is a very nice to have, but we don't have the resources to pick it up at the moment. Just a heads up in case you want/can to assign this to someone in the lab @LilySnow

github-actions[bot] commented 1 month ago

This issue is stale because it has been open for 30 days with no activity.