ci: update ruff and fix linting rules

DeepRank / deeprank2

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Apache License 2.0

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Closed DaniBodor closed 1 month ago

DaniBodor commented 1 month ago

I did a few test asserts to ensure that the dicts here are identical to the dicts as they were previously formatted