Closed LilySnow closed 4 years ago
Really? The PSSM class has map_pssm
function.
I thought it was the case as well. It's maybe that we need better documentation :)
Yes, that function is there. But it is built in the class and that class requires a pdb file as input. See issue #15.
The function can actually do that by ignoring the PSSM.get_fasta()
step, instead you create a ./fasta
folder and put the customed fasta file to this folder, other steps are same as previous (https://iscoredoc.readthedocs.io/en/latest/pssm.html).
I will close this issue and update the doc then.
Thanks. One example in the doc should be enough.
Independent PSSMGen will be used (https://github.com/DeepRank/PSSMGen), clear examples are shown in README.
Many times, we just need to calculate pssm once (time-consuming) and map it to all the pdb files (fast). The current code does not seem to allow it.