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DeepRegNet / DeepReg

Medical image registration using deep learning
Apache License 2.0
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Demo for velocity-predicting option #703

Closed YipengHu closed 3 years ago

YipengHu commented 3 years ago

Subject of the feature

The DVF has been implemented without a demo demonstrating its applicability.

If the feature request is approved, would you be willing to submit a PR? (Help can be provided if you need assistance submitting a PR)

Yes / No

YipengHu commented 3 years ago

Suggest:

It'd be interesting to look at the mask demo: edit code: https://github.com/DeepRegNet/DeepReg/tree/main/demos/grouped_mask_prostate_longitudinal update doc: https://github.com/DeepRegNet/DeepReg/blob/main/docs/source/demo/grouped_mask_prostate_longitudinal.rst According to the config here: https://deepreg.readthedocs.io/en/latest/docs/configuration.html#localnet - change the method to dvf Not sure it needs to edit any functions at this stage, but the related functions may be here: class DVFModel(DDFModel): in https://github.com/DeepRegNet/DeepReg/blob/main/deepreg/model/network.py

acasamitjana commented 3 years ago

If no one else is interested, I will do this one after the Easter break

YipengHu commented 3 years ago

If no one else is interested, I will do this one after the Easter break

@acasamitjana thanks! I am asking a student looking at this as well, can i get back to you around easter to see if he is still going to pick this up?

acasamitjana commented 3 years ago

yes, sure, let me know!

Zhiyuan-w commented 3 years ago

How to assign this ticket?

YipengHu commented 3 years ago

How to assign this ticket?

there is an icon on the top-right - i've done it.

Zhiyuan-w commented 3 years ago

(deepreg) E:\DeepReg>deepreg_train --gpu '0' --config_path demos/grouped_mask_prostate_longitudinal/grouped_mask_prostate_longitudinal.yaml --log_dir demos/grouped_mask_prostate_longitudinal --exp_name logs_train 2021-05-21 17:55:49.859241: I tensorflow/stream_executor/platform/default/dso_loader.cc:48] Successfully opened dynamic library cudart64_101.dll usage: deepreg_train [-h] --gpu GPU [--gpu_allow_growth GPU_ALLOW_GROWTH] [--ckpt_path CKPT_PATH] [--log_root LOG_ROOT] [--log_dir LOG_DIR] --config_path CONFIG_PATH [CONFIG_PATH ...] [--max_epochs MAX_EPOCHS] Error message: deepreg_train: error: unrecognized arguments: --exp_name logs_train @mathpluscode

stale[bot] commented 3 years ago

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.