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Defense-Circuits-Lab / findmycells

An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts
https://defense-circuits-lab.github.io/findmycells/
GNU General Public License v3.0
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Setting a slider range in preprocessing step causes fail in segmentation step #21

Closed KonKob closed 1 year ago

KonKob commented 1 year ago

Solution1:

in strategies.py, add filter to line 119: expected_file_count = sum(filter(None, database.file_infos["total_planes"]))

KonKob commented 1 year ago

Setting a slider range is not a solution to process only a certain part of images. If you want to do so, you must remove all images from the microscopy_images folder except the ones you want to keep.