Defense-Circuits-Lab / findmycells

An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts
https://defense-circuits-lab.github.io/findmycells/
GNU General Public License v3.0
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Deepflash2 versioning error #50

Closed KonKob closed 1 month ago

KonKob commented 1 month ago

When running segmentation using deepflash2, the following error occurred: AttributeError: 'functools.partial' object has no attribute 'RandomGamma'

It was fixed by the developers of deepflash2 on GitHub, but not pypi by changing the dependencies. To run findmycells on google colab, make sure to run the both commands below! !pip install pandas==1.4.0 !pip install fastcore==1.5.27