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Delta-Stewardship-Council / swg-21-connectivity

connectivity synthesis subgroup
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Add initials and saved.state #34

Closed jessicaguo closed 2 years ago

jessicaguo commented 2 years ago

I added an initials generating function, which allows the model to start successfully. I also introduced the postjags package from GitHub, which saves state (so we can start a new model run where the previous one left off).

The model now runs and is rather slow. Unclear if so many iterations are really needed. The sig.eps parameter has yet to converge. Regardless, the posterior values make some sense. I wonder if it's better to have a single Qant covariate, rather than separating Q from Qant?

ryanpeek commented 2 years ago

great thanks much. Quick question, was there a script you have that generates the Chla_all.Rda file? I haven't been able to track that down yet and would like to have some way to regenerate/trace that data. I'll merge this in...thanks much. I think it may make sense to start with a single Qant, or a simpler index...let's see if we can get this to go or maybe simplify and give it a shot. Thanks again!