I have receptor where grid box size is going upto 404090. So i received this error. Is ther any way i can do docking with this grid size.
`WARNING: The search space volume > 27000 Angstrom^3 (See FAQ)
Using virtual sreening mode
Output will be in the directory ./test2_out
Reading input ... done.
Setting up the scoring function ... done.
Using heuristic search_depth
Analyzing the binding site ... done.
GPU Platform: NVIDIA CUDA
GPU Device: NVIDIA GeForce GTX 1650
Using random seed: 189892838
An error occurred: relation too large!.
Please contact the author, Jiansheng Wu jansen@njupt.edu, so
that this problem can be resolved. The reproducibility of the
error may be vital, so please remember to include the following in
your problem report:
the EXACT error message,
your version of the program,
the type of computer system you are running it on,
all command line options,
configuration file (if used),
ligand file as PDBQT,
receptor file as PDBQT,
flexible side chains file as PDBQT (if used),
output file as PDBQT (if any),
input (if possible),
random seed the program used (this is printed when the program starts).
I have receptor where grid box size is going upto 404090. So i received this error. Is ther any way i can do docking with this grid size.
`WARNING: The search space volume > 27000 Angstrom^3 (See FAQ) Using virtual sreening mode
Output will be in the directory ./test2_out Reading input ... done. Setting up the scoring function ... done. Using heuristic search_depth Analyzing the binding site ... done. GPU Platform: NVIDIA CUDA GPU Device: NVIDIA GeForce GTX 1650 Using random seed: 189892838
An error occurred: relation too large!.
Please contact the author, Jiansheng Wu jansen@njupt.edu, so that this problem can be resolved. The reproducibility of the error may be vital, so please remember to include the following in your problem report:
Thank you! `